JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GSTM1_chr1_109682817_109698745	0/0	c0000	0	122	28	25	57	5	7	copy fasta	GSTM1	chr1	109682817	109698745
GSTM1_chr1_109682817_109698745	0/0	c0001	657	45	33	10	0	1	1	copy fasta	GSTM1	chr1	109682817	109698745
GSTM1_chr1_109682817_109698745	0/0	c0002	657	39	0	6	30	0	3	copy fasta	GSTM1	chr1	109682817	109698745
GSTM1_chr1_109682817_109698745	0/0	c0003	657	38	7	9	17	1	4	copy fasta	GSTM1	chr1	109682817	109698745
GSTM1_chr1_109682817_109698745	0/0	c0004	657	2	2	0	0	0	0	copy fasta	GSTM1	chr1	109682817	109698745
GSTM1_chr1_109682817_109698745	0/0	c0005	657	2	1	0	0	0	1	copy fasta	GSTM1	chr1	109682817	109698745
GSTM1_chr1_109682817_109698745	0/0	c0006	652	1	0	0	1	0	0	copy fasta	GSTM1	chr1	109682817	109698745
GSTM2_chr1_109663057_109680286	1/1	c0001	657	322	79	58	136	10	37	copy fasta	GSTM2	chr1	109663057	109680286
GSTM2_chr1_109663057_109680286	0/0	c0002	657	29	13	7	0	6	3	copy fasta	GSTM2	chr1	109663057	109680286
GSTM2_chr1_109663057_109680286	0/0	c0003	657	1	0	0	1	0	0	copy fasta	GSTM2	chr1	109663057	109680286
GSTM2_chr1_109663057_109680286	0/0	c0004	657	1	1	0	0	0	0	copy fasta	GSTM2	chr1	109663057	109680286
GSTM2_chr1_109663057_109680286	0/0	c0005	657	1	0	1	0	0	0	copy fasta	GSTM2	chr1	109663057	109680286
GSTM2_chr1_109663057_109680286	0/0	c0006	657	1	1	0	0	0	0	copy fasta	GSTM2	chr1	109663057	109680286
GSTM2_chr1_109663057_109680286	0/0	c0007	657	1	0	0	1	0	0	copy fasta	GSTM2	chr1	109663057	109680286
GSTM3_chr1_109728937_109746038	1/0	c0001	678	223	85	41	62	9	25	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/1	c0002	678	175	6	23	121	7	17	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	c0003	678	1	1	0	0	0	0	copy fasta	GSTM3	chr1	109728937	109746038
GSTM3_chr1_109728937_109746038	0/0	c0004	678	1	0	0	1	0	0	copy fasta	GSTM3	chr1	109728937	109746038
GSTM4_chr1_109651099_109666700	0/1	c0001	657	270	34	58	128	13	36	copy fasta	GSTM4	chr1	109651099	109666700
GSTM4_chr1_109651099_109666700	1/0	c0002	657	72	42	13	8	1	7	copy fasta	GSTM4	chr1	109651099	109666700
GSTM4_chr1_109651099_109666700	0/0	c0003	657	16	14	2	0	0	0	copy fasta	GSTM4	chr1	109651099	109666700
GSTM4_chr1_109651099_109666700	0/0	c0004	657	1	0	0	0	0	1	copy fasta	GSTM4	chr1	109651099	109666700
GSTM4_chr1_109651099_109666700	0/0	c0005	657	1	1	0	0	0	0	copy fasta	GSTM4	chr1	109651099	109666700
GSTM4_chr1_109651099_109666700	0/0	c0006	657	1	1	0	0	0	0	copy fasta	GSTM4	chr1	109651099	109666700
GSTM4_chr1_109651099_109666700	0/0	c0007	657	1	0	1	0	0	0	copy fasta	GSTM4	chr1	109651099	109666700
GSTM4_chr1_109651099_109666700	0/0	c0008	657	1	0	0	1	0	0	copy fasta	GSTM4	chr1	109651099	109666700
GSTM4_chr1_109651099_109666700	0/0	c0009	657	1	0	0	1	0	0	copy fasta	GSTM4	chr1	109651099	109666700
GSTM5_chr1_109707251_109723268	1/1	c0001	657	315	59	57	149	13	35	copy fasta	GSTM5	chr1	109707251	109723268
GSTM5_chr1_109707251_109723268	0/0	c0002	657	44	33	4	0	3	4	copy fasta	GSTM5	chr1	109707251	109723268
GSTM5_chr1_109707251_109723268	0/0	c0003	657	15	0	0	15	0	0	copy fasta	GSTM5	chr1	109707251	109723268
GSTM5_chr1_109707251_109723268	0/0	c0004	657	6	1	2	0	0	3	copy fasta	GSTM5	chr1	109707251	109723268
GSTM5_chr1_109707251_109723268	0/0	c0005	657	3	1	2	0	0	0	copy fasta	GSTM5	chr1	109707251	109723268
GSTM5_chr1_109707251_109723268	0/0	c0006	657	3	0	1	0	0	2	copy fasta	GSTM5	chr1	109707251	109723268
GSTM5_chr1_109707251_109723268	0/0	c0007	657	2	0	0	0	0	2	copy fasta	GSTM5	chr1	109707251	109723268
GSTM5_chr1_109707251_109723268	0/0	c0008	657	2	0	2	0	0	0	copy fasta	GSTM5	chr1	109707251	109723268
GSTM5_chr1_109707251_109723268	0/0	c0009	657	1	1	0	0	0	0	copy fasta	GSTM5	chr1	109707251	109723268
GSTM5_chr1_109707251_109723268	0/0	c0010	657	1	1	0	0	0	0	copy fasta	GSTM5	chr1	109707251	109723268
GSTM5_chr1_109707251_109723268	0/0	c0011	657	1	0	0	1	0	0	copy fasta	GSTM5	chr1	109707251	109723268
GSTM5_chr1_109707251_109723268	0/0	c0012	657	1	0	0	1	0	0	copy fasta	GSTM5	chr1	109707251	109723268
GSTO1_chr10_104249892_104272455	1/1	c0001	726	286	82	39	132	7	24	copy fasta	GSTO1	chr10	104249892	104272455
GSTO1_chr10_104249892_104272455	0/0	c0002	726	70	7	17	36	4	6	copy fasta	GSTO1	chr10	104249892	104272455
GSTO1_chr10_104249892_104272455	0/0	c0003	723	18	4	4	5	0	5	copy fasta	GSTO1	chr10	104249892	104272455
GSTO1_chr10_104249892_104272455	0/0	c0004	726	1	0	0	0	1	0	copy fasta	GSTO1	chr10	104249892	104272455
GSTO1_chr10_104249892_104272455	0/0	c0005	726	1	0	0	1	0	0	copy fasta	GSTO1	chr10	104249892	104272455
GSTO1_chr10_104249892_104272455	0/0	c0006	726	1	1	0	0	0	0	copy fasta	GSTO1	chr10	104249892	104272455
GSTO1_chr10_104249892_104272455	0/0	c0007	726	1	0	0	0	0	1	copy fasta	GSTO1	chr10	104249892	104272455
GSTO2_chr10_104264184_104309950	1/0	c0001	732	120	14	31	56	7	11	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	c0002	732	118	50	16	33	5	14	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/1	c0003	732	35	8	2	23	0	1	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	c0004	732	18	17	1	0	0	0	copy fasta	GSTO2	chr10	104264184	104309950