JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GSTO2_chr10_104264184_104309950	0/0	c0005	732	6	2	0	4	0	0	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	c0006	732	1	1	0	0	0	0	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	c0007	732	1	1	0	0	0	0	copy fasta	GSTO2	chr10	104264184	104309950
GSTO2_chr10_104264184_104309950	0/0	c0008	732	1	1	0	0	0	0	copy fasta	GSTO2	chr10	104264184	104309950
GSTP1_chr11_67578812_67591653	1/1	c0001	632	244	37	34	134	12	25	copy fasta	GSTP1	chr11	67578812	67591653
GSTP1_chr11_67578812_67591653	0/0	c0002	632	87	19	27	28	6	7	copy fasta	GSTP1	chr11	67578812	67591653
GSTP1_chr11_67578812_67591653	0/0	c0003	632	19	19	0	0	0	0	copy fasta	GSTP1	chr11	67578812	67591653
GSTP1_chr11_67578812_67591653	0/0	c0004	632	15	8	2	3	0	2	copy fasta	GSTP1	chr11	67578812	67591653
GSTP1_chr11_67578812_67591653	0/0	c0005	632	11	0	5	0	0	6	copy fasta	GSTP1	chr11	67578812	67591653
GSTP1_chr11_67578812_67591653	0/0	c0006	632	10	8	2	0	0	0	copy fasta	GSTP1	chr11	67578812	67591653
GSTP1_chr11_67578812_67591653	0/0	c0007	632	1	0	1	0	0	0	copy fasta	GSTP1	chr11	67578812	67591653
GSTP1_chr11_67578812_67591653	0/0	c0008	632	1	0	0	1	0	0	copy fasta	GSTP1	chr11	67578812	67591653
GSTP1_chr11_67578812_67591653	0/0	c0009	632	1	1	0	0	0	0	copy fasta	GSTP1	chr11	67578812	67591653
GSTP1_chr11_67578812_67591653	0/0	c0010	632	1	0	1	0	0	0	copy fasta	GSTP1	chr11	67578812	67591653
GSTP1_chr11_67578812_67591653	0/0	c0011	632	1	1	0	0	0	0	copy fasta	GSTP1	chr11	67578812	67591653
GSTP1_chr11_67578812_67591653	0/0	c0012	632	1	1	0	0	0	0	copy fasta	GSTP1	chr11	67578812	67591653
GSTT2B_chr22_23952414_23966195	0/1	c0001	735	45	5	6	27	1	5	copy fasta	GSTT2B	chr22	23952414	23966195
GSTT2B_chr22_23952414_23966195	0/0	c0002	735	44	16	13	11	0	4	copy fasta	GSTT2B	chr22	23952414	23966195
GSTT2B_chr22_23952414_23966195	0/0	c0003	735	15	0	7	7	0	1	copy fasta	GSTT2B	chr22	23952414	23966195
GSTT2B_chr22_23952414_23966195	0/0	c0004	735	2	0	0	2	0	0	copy fasta	GSTT2B	chr22	23952414	23966195
GSTT2B_chr22_23952414_23966195	0/0	c0005	735	2	2	0	0	0	0	copy fasta	GSTT2B	chr22	23952414	23966195
GSTT2B_chr22_23952414_23966195	0/0	c0006	735	2	0	0	2	0	0	copy fasta	GSTT2B	chr22	23952414	23966195
GSTT2B_chr22_23952414_23966195	0/0	c0007	735	1	0	0	1	0	0	copy fasta	GSTT2B	chr22	23952414	23966195
GSTT2B_chr22_23952414_23966195	0/0	c0008	735	1	0	0	1	0	0	copy fasta	GSTT2B	chr22	23952414	23966195
GSTT2B_chr22_23952414_23966195	0/0	c0009	735	1	0	1	0	0	0	copy fasta	GSTT2B	chr22	23952414	23966195
GSTT2B_chr22_23952414_23966195	0/0	c0010	735	1	1	0	0	0	0	copy fasta	GSTT2B	chr22	23952414	23966195
GSTT2B_chr22_23952414_23966195	0/0	c0011	735	1	0	0	0	1	0	copy fasta	GSTT2B	chr22	23952414	23966195
GSTT2B_chr22_23952414_23966195	0/0	c0012	735	1	1	0	0	0	0	copy fasta	GSTT2B	chr22	23952414	23966195
GSTT2B_chr22_23952414_23966195	0/0	c0013	735	1	0	1	0	0	0	copy fasta	GSTT2B	chr22	23952414	23966195
GSTT2B_chr22_23952414_23966195	0/0	c0014	735	1	1	0	0	0	0	copy fasta	GSTT2B	chr22	23952414	23966195
GSTT2B_chr22_23952414_23966195	0/0	c0015	735	1	0	0	1	0	0	copy fasta	GSTT2B	chr22	23952414	23966195
GSTT4_chr22_23993401_24010453	1/0	c0001	726	76	7	6	53	4	5	copy fasta	GSTT4	chr22	23993401	24010453
GSTT4_chr22_23993401_24010453	0/0	c0002	726	48	14	13	14	2	5	copy fasta	GSTT4	chr22	23993401	24010453
GSTT4_chr22_23993401_24010453	0/0	c0003	726	31	1	1	28	0	1	copy fasta	GSTT4	chr22	23993401	24010453
GSTT4_chr22_23993401_24010453	0/0	c0004	726	2	0	0	0	0	2	copy fasta	GSTT4	chr22	23993401	24010453
GSTT4_chr22_23993401_24010453	0/0	c0005	726	1	1	0	0	0	0	copy fasta	GSTT4	chr22	23993401	24010453
GSTT4_chr22_23993401_24010453	0/0	c0006	726	1	0	0	0	0	1	copy fasta	GSTT4	chr22	23993401	24010453
GSTT4_chr22_23993401_24010453	0/0	c0007	726	1	1	0	0	0	0	copy fasta	GSTT4	chr22	23993401	24010453
GSTT4_chr22_23993401_24010453	0/0	c0008	726	1	0	0	1	0	0	copy fasta	GSTT4	chr22	23993401	24010453
GSTZ1_chr14_77316036_77336597	0/1	c0001	651	226	62	31	101	4	27	copy fasta	GSTZ1	chr14	77316036	77336597
GSTZ1_chr14_77316036_77336597	0/0	c0002	651	147	24	19	91	7	6	copy fasta	GSTZ1	chr14	77316036	77336597
GSTZ1_chr14_77316036_77336597	1/0	c0003	651	51	6	26	4	6	8	copy fasta	GSTZ1	chr14	77316036	77336597
GSTZ1_chr14_77316036_77336597	0/0	c0004	651	3	0	0	3	0	0	copy fasta	GSTZ1	chr14	77316036	77336597
GSTZ1_chr14_77316036_77336597	0/0	c0005	651	2	1	0	0	1	0	copy fasta	GSTZ1	chr14	77316036	77336597
GSTZ1_chr14_77316036_77336597	0/0	c0006	651	1	1	0	0	0	0	copy fasta	GSTZ1	chr14	77316036	77336597
GSTZ1_chr14_77316036_77336597	0/0	c0007	651	1	0	0	1	0	0	copy fasta	GSTZ1	chr14	77316036	77336597
GSTZ1_chr14_77316036_77336597	0/0	c0008	651	1	0	1	0	0	0	copy fasta	GSTZ1	chr14	77316036	77336597
GSTZ1_chr14_77316036_77336597	0/0	c0009	651	1	0	0	0	0	1	copy fasta	GSTZ1	chr14	77316036	77336597
GSTZ1_chr14_77316036_77336597	0/0	c0010	651	1	0	1	0	0	0	copy fasta	GSTZ1	chr14	77316036	77336597
GSX1_chr13_27787483_27799768	0/0	c0001	795	363	82	59	167	14	41	copy fasta	GSX1	chr13	27787483	27799768