JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GTF2E1_chr3_120737744_120788069	0/0	c0004	1320	1	0	0	0	0	1	copy fasta	GTF2E1	chr3	120737744	120788069
GTF2E1_chr3_120737744_120788069	0/0	c0005	1320	1	1	0	0	0	0	copy fasta	GTF2E1	chr3	120737744	120788069
GTF2E1_chr3_120737744_120788069	0/0	c0006	1320	1	1	0	0	0	0	copy fasta	GTF2E1	chr3	120737744	120788069
GTF2E1_chr3_120737744_120788069	0/0	c0007	1320	1	1	0	0	0	0	copy fasta	GTF2E1	chr3	120737744	120788069
GTF2E1_chr3_120737744_120788069	0/0	c0008	1320	1	0	1	0	0	0	copy fasta	GTF2E1	chr3	120737744	120788069
GTF2E2_chr8_30573318_30663236	1/1	c0001	876	376	88	64	172	12	38	copy fasta	GTF2E2	chr8	30573318	30663236
GTF2E2_chr8_30573318_30663236	0/0	c0002	876	1	1	0	0	0	0	copy fasta	GTF2E2	chr8	30573318	30663236
GTF2E2_chr8_30573318_30663236	0/0	c0003	876	1	1	0	0	0	0	copy fasta	GTF2E2	chr8	30573318	30663236
GTF2F1_chr19_6374572_6398164	1/1	c0001	1554	358	77	61	165	13	40	copy fasta	GTF2F1	chr19	6374572	6398164
GTF2F1_chr19_6374572_6398164	0/0	c0002	1554	8	5	3	0	0	0	copy fasta	GTF2F1	chr19	6374572	6398164
GTF2F1_chr19_6374572_6398164	0/0	c0003	1554	2	0	0	2	0	0	copy fasta	GTF2F1	chr19	6374572	6398164
GTF2F1_chr19_6374572_6398164	0/0	c0004	1554	1	0	0	0	1	0	copy fasta	GTF2F1	chr19	6374572	6398164
GTF2F1_chr19_6374572_6398164	0/0	c0005	1554	1	1	0	0	0	0	copy fasta	GTF2F1	chr19	6374572	6398164
GTF2F1_chr19_6374572_6398164	0/0	c0006	1554	1	0	0	1	0	0	copy fasta	GTF2F1	chr19	6374572	6398164
GTF2F1_chr19_6374572_6398164	0/0	c0007	1554	1	1	0	0	0	0	copy fasta	GTF2F1	chr19	6374572	6398164
GTF2F1_chr19_6374572_6398164	0/0	c0008	1554	1	1	0	0	0	0	copy fasta	GTF2F1	chr19	6374572	6398164
GTF2F1_chr19_6374572_6398164	0/0	c0009	1554	1	0	0	1	0	0	copy fasta	GTF2F1	chr19	6374572	6398164
GTF2F1_chr19_6374572_6398164	0/0	c0010	1554	1	1	0	0	0	0	copy fasta	GTF2F1	chr19	6374572	6398164
GTF2F1_chr19_6374572_6398164	0/0	c0011	1554	1	1	0	0	0	0	copy fasta	GTF2F1	chr19	6374572	6398164
GTF2F1_chr19_6374572_6398164	0/0	c0012	1554	1	0	0	1	0	0	copy fasta	GTF2F1	chr19	6374572	6398164
GTF2F1_chr19_6374572_6398164	0/0	c0013	1554	1	1	0	0	0	0	copy fasta	GTF2F1	chr19	6374572	6398164
GTF2F2_chr13_45115510_45289893	0/0	c0001	750	105	66	18	12	2	7	copy fasta	GTF2F2	chr13	45115510	45289893
GTF2F2_chr13_45115510_45289893	1/1	c0002	750	104	14	22	53	2	11	copy fasta	GTF2F2	chr13	45115510	45289893
GTF2F2_chr13_45115510_45289893	0/0	c0003	750	1	0	0	1	0	0	copy fasta	GTF2F2	chr13	45115510	45289893
GTF2H1_chr11_18317567_18372045	1/1	c0001	1647	360	98	63	152	16	29	copy fasta	GTF2H1	chr11	18317567	18372045
GTF2H1_chr11_18317567_18372045	0/0	c0002	1647	4	0	2	2	0	0	copy fasta	GTF2H1	chr11	18317567	18372045
GTF2H1_chr11_18317567_18372045	0/0	c0003	1647	3	0	0	3	0	0	copy fasta	GTF2H1	chr11	18317567	18372045
GTF2H1_chr11_18317567_18372045	0/0	c0004	1647	1	0	1	0	0	0	copy fasta	GTF2H1	chr11	18317567	18372045
GTF2H1_chr11_18317567_18372045	0/0	c0005	1647	1	0	0	1	0	0	copy fasta	GTF2H1	chr11	18317567	18372045
GTF2H1_chr11_18317567_18372045	0/0	c0006	1647	1	0	0	0	0	1	copy fasta	GTF2H1	chr11	18317567	18372045
GTF2H2C_chr5_69555191_69600221	0/1	c0001	1188	113	39	24	27	5	17	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	c0002	1188	38	6	11	16	1	4	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	c0003	1188	6	0	3	2	0	1	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	c0004	1188	5	4	1	0	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	c0005	1188	1	0	1	0	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	c0006	1188	1	0	0	1	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	c0007	1188	1	0	0	1	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	c0008	1188	1	1	0	0	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	c0009	1188	1	0	0	1	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2_chr5_71030347_71072676	0/1	c0001	1188	46	19	11	8	1	6	copy fasta	GTF2H2	chr5	71030347	71072676
GTF2H2_chr5_71030347_71072676	0/0	c0002	1188	25	5	9	6	1	4	copy fasta	GTF2H2	chr5	71030347	71072676
GTF2H2_chr5_71030347_71072676	0/0	c0003	1188	3	1	2	0	0	0	copy fasta	GTF2H2	chr5	71030347	71072676
GTF2H2_chr5_71030347_71072676	0/0	c0004	1188	2	1	1	0	0	0	copy fasta	GTF2H2	chr5	71030347	71072676
GTF2H2_chr5_71030347_71072676	0/0	c0005	1188	1	0	1	0	0	0	copy fasta	GTF2H2	chr5	71030347	71072676
GTF2H2_chr5_71030347_71072676	0/0	c0006	1188	1	1	0	0	0	0	copy fasta	GTF2H2	chr5	71030347	71072676
GTF2H2_chr5_71030347_71072676	0/0	c0007	1188	1	1	0	0	0	0	copy fasta	GTF2H2	chr5	71030347	71072676
GTF2H3_chr12_123628829_123667604	1/1	c0001	927	167	36	29	63	11	26	copy fasta	GTF2H3	chr12	123628829	123667604
GTF2H3_chr12_123628829_123667604	0/0	c0002	927	92	49	19	7	7	10	copy fasta	GTF2H3	chr12	123628829	123667604
GTF2H3_chr12_123628829_123667604	0/0	c0003	927	10	5	3	0	0	2	copy fasta	GTF2H3	chr12	123628829	123667604
GTF2H3_chr12_123628829_123667604	0/0	c0004	927	2	2	0	0	0	0	copy fasta	GTF2H3	chr12	123628829	123667604