JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GTF2H3_chr12_123628829_123667604	0/0	c0005	927	1	0	1	0	0	0	copy fasta	GTF2H3	chr12	123628829	123667604
GTF2H4_chr6_30903207_30919106	0/0	c0001	1389	216	58	48	74	9	27	copy fasta	GTF2H4	chr6	30903207	30919106
GTF2H4_chr6_30903207_30919106	0/1	c0002	1389	180	32	25	99	6	17	copy fasta	GTF2H4	chr6	30903207	30919106
GTF2H4_chr6_30903207_30919106	0/0	c0003	1389	5	2	0	1	1	1	copy fasta	GTF2H4	chr6	30903207	30919106
GTF2H4_chr6_30903207_30919106	0/0	c0004	1389	2	0	2	0	0	0	copy fasta	GTF2H4	chr6	30903207	30919106
GTF2H4_chr6_30903207_30919106	0/0	c0005	1389	2	0	2	0	0	0	copy fasta	GTF2H4	chr6	30903207	30919106
GTF2H4_chr6_30903207_30919106	0/0	c0006	1389	2	0	0	2	0	0	copy fasta	GTF2H4	chr6	30903207	30919106
GTF2H4_chr6_30903207_30919106	0/0	c0007	1389	1	0	1	0	0	0	copy fasta	GTF2H4	chr6	30903207	30919106
GTF2H4_chr6_30903207_30919106	0/0	c0008	1389	1	0	0	1	0	0	copy fasta	GTF2H4	chr6	30903207	30919106
GTF2H4_chr6_30903207_30919106	0/0	c0009	1389	1	0	0	0	0	1	copy fasta	GTF2H4	chr6	30903207	30919106
GTF2H4_chr6_30903207_30919106	0/0	c0010	1389	1	0	0	1	0	0	copy fasta	GTF2H4	chr6	30903207	30919106
GTF2H5_chr6_158163350_158204344	1/1	c0001	216	384	90	70	160	14	48	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2IRD1_chr7_74448906_74607605	1/1	c0001	2835	121	17	40	37	6	19	copy fasta	GTF2IRD1	chr7	74448906	74607605
GTF2IRD1_chr7_74448906_74607605	0/0	c0002	2835	42	0	3	37	0	2	copy fasta	GTF2IRD1	chr7	74448906	74607605
GTF2IRD1_chr7_74448906_74607605	0/0	c0003	2835	33	7	7	11	1	7	copy fasta	GTF2IRD1	chr7	74448906	74607605
GTF2IRD1_chr7_74448906_74607605	0/0	c0004	2835	23	18	1	4	0	0	copy fasta	GTF2IRD1	chr7	74448906	74607605
GTF2IRD1_chr7_74448906_74607605	0/0	c0005	2835	11	10	1	0	0	0	copy fasta	GTF2IRD1	chr7	74448906	74607605
GTF2IRD1_chr7_74448906_74607605	0/0	c0006	2835	6	4	0	1	1	0	copy fasta	GTF2IRD1	chr7	74448906	74607605
GTF2IRD1_chr7_74448906_74607605	0/0	c0007	2835	6	0	1	3	2	0	copy fasta	GTF2IRD1	chr7	74448906	74607605
GTF2IRD1_chr7_74448906_74607605	0/0	c0008	2835	3	1	1	0	0	1	copy fasta	GTF2IRD1	chr7	74448906	74607605
GTF2IRD1_chr7_74448906_74607605	0/0	c0009	2835	2	1	1	0	0	0	copy fasta	GTF2IRD1	chr7	74448906	74607605
GTF2IRD1_chr7_74448906_74607605	0/0	c0010	2835	2	2	0	0	0	0	copy fasta	GTF2IRD1	chr7	74448906	74607605
GTF2IRD1_chr7_74448906_74607605	0/0	c0011	2835	2	2	0	0	0	0	copy fasta	GTF2IRD1	chr7	74448906	74607605
GTF2IRD1_chr7_74448906_74607605	0/0	c0012	2835	2	1	0	1	0	0	copy fasta	GTF2IRD1	chr7	74448906	74607605
GTF2IRD1_chr7_74448906_74607605	0/0	c0013	2851	1	0	0	1	0	0	copy fasta	GTF2IRD1	chr7	74448906	74607605
GTF2IRD1_chr7_74448906_74607605	0/0	c0014	2835	1	0	0	1	0	0	copy fasta	GTF2IRD1	chr7	74448906	74607605
GTF2IRD1_chr7_74448906_74607605	0/0	c0015	2835	1	0	1	0	0	0	copy fasta	GTF2IRD1	chr7	74448906	74607605
GTF2IRD1_chr7_74448906_74607605	0/0	c0016	2835	1	0	1	0	0	0	copy fasta	GTF2IRD1	chr7	74448906	74607605
GTF2IRD1_chr7_74448906_74607605	0/0	c0017	2835	1	0	1	0	0	0	copy fasta	GTF2IRD1	chr7	74448906	74607605
GTF2IRD1_chr7_74448906_74607605	0/0	c0018	2835	1	1	0	0	0	0	copy fasta	GTF2IRD1	chr7	74448906	74607605
GTF2IRD1_chr7_74448906_74607605	0/0	c0019	2835	1	1	0	0	0	0	copy fasta	GTF2IRD1	chr7	74448906	74607605
GTF2IRD1_chr7_74448906_74607605	0/0	c0020	2835	1	1	0	0	0	0	copy fasta	GTF2IRD1	chr7	74448906	74607605
GTF2IRD1_chr7_74448906_74607605	0/0	c0021	2835	1	0	0	0	0	1	copy fasta	GTF2IRD1	chr7	74448906	74607605
GTF2IRD2B_chr7_75087590_75154817	1/1	c0001	2850	129	28	33	37	10	19	copy fasta	GTF2IRD2B	chr7	75087590	75154817
GTF2IRD2B_chr7_75087590_75154817	0/0	c0002	2850	16	15	1	0	0	0	copy fasta	GTF2IRD2B	chr7	75087590	75154817
GTF2IRD2B_chr7_75087590_75154817	0/0	c0003	2850	6	0	0	6	0	0	copy fasta	GTF2IRD2B	chr7	75087590	75154817
GTF2IRD2B_chr7_75087590_75154817	0/0	c0004	2850	5	4	0	1	0	0	copy fasta	GTF2IRD2B	chr7	75087590	75154817
GTF2IRD2B_chr7_75087590_75154817	0/0	c0005	2850	3	3	0	0	0	0	copy fasta	GTF2IRD2B	chr7	75087590	75154817
GTF2IRD2B_chr7_75087590_75154817	0/0	c0006	2850	2	2	0	0	0	0	copy fasta	GTF2IRD2B	chr7	75087590	75154817
GTF2IRD2B_chr7_75087590_75154817	0/0	c0007	2850	1	1	0	0	0	0	copy fasta	GTF2IRD2B	chr7	75087590	75154817
GTF2IRD2B_chr7_75087590_75154817	0/0	c0008	2850	1	0	0	1	0	0	copy fasta	GTF2IRD2B	chr7	75087590	75154817
GTF2IRD2B_chr7_75087590_75154817	0/0	c0009	2850	1	0	0	1	0	0	copy fasta	GTF2IRD2B	chr7	75087590	75154817
GTF2IRD2B_chr7_75087590_75154817	0/0	c0010	2850	1	1	0	0	0	0	copy fasta	GTF2IRD2B	chr7	75087590	75154817
GTF2IRD2B_chr7_75087590_75154817	0/0	c0011	2850	1	0	0	1	0	0	copy fasta	GTF2IRD2B	chr7	75087590	75154817
GTF2IRD2B_chr7_75087590_75154817	0/0	c0012	2850	1	0	0	1	0	0	copy fasta	GTF2IRD2B	chr7	75087590	75154817
GTF2IRD2B_chr7_75087590_75154817	0/0	c0013	2850	1	1	0	0	0	0	copy fasta	GTF2IRD2B	chr7	75087590	75154817
GTF2IRD2B_chr7_75087590_75154817	0/0	c0014	2850	1	1	0	0	0	0	copy fasta	GTF2IRD2B	chr7	75087590	75154817
GTF2IRD2B_chr7_75087590_75154817	0/0	c0015	2850	1	0	0	0	0	1	copy fasta	GTF2IRD2B	chr7	75087590	75154817
GTF2IRD2_chr7_74791151_74856605	0/0	c0001	2850	3	1	0	0	0	2	copy fasta	GTF2IRD2	chr7	74791151	74856605
GTF2IRD2_chr7_74791151_74856605	0/1	c0002	2850	2	1	0	0	0	0	copy fasta	GTF2IRD2	chr7	74791151	74856605