JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GTF2IRD2_chr7_74791151_74856605	1/0	c0003	2850	1	0	0	0	0	0	copy fasta	GTF2IRD2	chr7	74791151	74856605
GTF2IRD2_chr7_74791151_74856605	0/0	c0004	2850	1	0	1	0	0	0	copy fasta	GTF2IRD2	chr7	74791151	74856605
GTF2IRD2_chr7_74791151_74856605	0/0	c0005	2850	1	0	1	0	0	0	copy fasta	GTF2IRD2	chr7	74791151	74856605
GTF2I_chr7_74652718_74765692	0/0	c0001	2997	140	62	29	29	7	13	copy fasta	GTF2I	chr7	74652718	74765692
GTF2I_chr7_74652718_74765692	1/1	c0002	2997	26	6	6	3	2	7	copy fasta	GTF2I	chr7	74652718	74765692
GTF2I_chr7_74652718_74765692	0/0	c0003	2997	3	2	1	0	0	0	copy fasta	GTF2I	chr7	74652718	74765692
GTF2I_chr7_74652718_74765692	0/0	c0004	2997	2	2	0	0	0	0	copy fasta	GTF2I	chr7	74652718	74765692
GTF2I_chr7_74652718_74765692	0/0	c0005	2997	1	0	0	1	0	0	copy fasta	GTF2I	chr7	74652718	74765692
GTF2I_chr7_74652718_74765692	0/0	c0006	2997	1	0	0	1	0	0	copy fasta	GTF2I	chr7	74652718	74765692
GTF2I_chr7_74652718_74765692	0/0	c0007	2997	1	0	0	0	1	0	copy fasta	GTF2I	chr7	74652718	74765692
GTF3A_chr13_27419619_27440823	1/0	c0001	1098	349	69	57	177	10	35	copy fasta	GTF3A	chr13	27419619	27440823
GTF3A_chr13_27419619_27440823	0/1	c0002	1098	54	17	15	12	4	5	copy fasta	GTF3A	chr13	27419619	27440823
GTF3A_chr13_27419619_27440823	0/0	c0003	1098	13	13	0	0	0	0	copy fasta	GTF3A	chr13	27419619	27440823
GTF3A_chr13_27419619_27440823	0/0	c0004	1155	1	0	1	0	0	0	copy fasta	GTF3A	chr13	27419619	27440823
GTF3A_chr13_27419619_27440823	0/0	c0005	1098	1	0	0	1	0	0	copy fasta	GTF3A	chr13	27419619	27440823
GTF3A_chr13_27419619_27440823	0/0	c0006	1098	1	0	1	0	0	0	copy fasta	GTF3A	chr13	27419619	27440823
GTF3A_chr13_27419619_27440823	0/0	c0007	1098	1	1	0	0	0	0	copy fasta	GTF3A	chr13	27419619	27440823
GTF3C1_chr16_27455613_27554913	1/1	c0001	6330	172	59	31	63	6	11	copy fasta	GTF3C1	chr16	27455613	27554913
GTF3C1_chr16_27455613_27554913	0/0	c0002	6330	11	0	7	0	4	0	copy fasta	GTF3C1	chr16	27455613	27554913
GTF3C1_chr16_27455613_27554913	0/0	c0003	6330	5	5	0	0	0	0	copy fasta	GTF3C1	chr16	27455613	27554913
GTF3C1_chr16_27455613_27554913	0/0	c0004	6330	3	0	0	3	0	0	copy fasta	GTF3C1	chr16	27455613	27554913
GTF3C1_chr16_27455613_27554913	0/0	c0005	6330	3	3	0	0	0	0	copy fasta	GTF3C1	chr16	27455613	27554913
GTF3C1_chr16_27455613_27554913	0/0	c0006	6330	3	0	0	2	0	1	copy fasta	GTF3C1	chr16	27455613	27554913
GTF3C1_chr16_27455613_27554913	0/0	c0007	6330	3	2	1	0	0	0	copy fasta	GTF3C1	chr16	27455613	27554913
GTF3C1_chr16_27455613_27554913	0/0	c0008	6330	2	0	2	0	0	0	copy fasta	GTF3C1	chr16	27455613	27554913
GTF3C1_chr16_27455613_27554913	0/0	c0009	6330	2	2	0	0	0	0	copy fasta	GTF3C1	chr16	27455613	27554913
GTF3C1_chr16_27455613_27554913	0/0	c0010	6330	2	2	0	0	0	0	copy fasta	GTF3C1	chr16	27455613	27554913
GTF3C1_chr16_27455613_27554913	0/0	c0011	6330	1	1	0	0	0	0	copy fasta	GTF3C1	chr16	27455613	27554913
GTF3C1_chr16_27455613_27554913	0/0	c0012	6330	1	0	1	0	0	0	copy fasta	GTF3C1	chr16	27455613	27554913
GTF3C1_chr16_27455613_27554913	0/0	c0013	6330	1	0	0	1	0	0	copy fasta	GTF3C1	chr16	27455613	27554913
GTF3C1_chr16_27455613_27554913	0/0	c0014	6330	1	0	1	0	0	0	copy fasta	GTF3C1	chr16	27455613	27554913
GTF3C1_chr16_27455613_27554913	0/0	c0015	6330	1	1	0	0	0	0	copy fasta	GTF3C1	chr16	27455613	27554913
GTF3C1_chr16_27455613_27554913	0/0	c0016	6330	1	1	0	0	0	0	copy fasta	GTF3C1	chr16	27455613	27554913
GTF3C1_chr16_27455613_27554913	0/0	c0017	6330	1	0	0	0	0	1	copy fasta	GTF3C1	chr16	27455613	27554913
GTF3C1_chr16_27455613_27554913	0/0	c0018	6330	1	0	0	1	0	0	copy fasta	GTF3C1	chr16	27455613	27554913
GTF3C1_chr16_27455613_27554913	0/0	c0019	6330	1	0	0	1	0	0	copy fasta	GTF3C1	chr16	27455613	27554913
GTF3C1_chr16_27455613_27554913	0/0	c0020	6330	1	0	0	1	0	0	copy fasta	GTF3C1	chr16	27455613	27554913
GTF3C1_chr16_27455613_27554913	0/0	c0021	6330	1	0	0	0	0	1	copy fasta	GTF3C1	chr16	27455613	27554913
GTF3C1_chr16_27455613_27554913	0/0	c0022	6330	1	1	0	0	0	0	copy fasta	GTF3C1	chr16	27455613	27554913
GTF3C1_chr16_27455613_27554913	0/0	c0023	6330	1	0	1	0	0	0	copy fasta	GTF3C1	chr16	27455613	27554913
GTF3C1_chr16_27455613_27554913	0/0	c0024	6330	1	1	0	0	0	0	copy fasta	GTF3C1	chr16	27455613	27554913
GTF3C2_chr2_27320854_27361764	1/0	c0001	2736	142	22	25	66	10	18	copy fasta	GTF3C2	chr2	27320854	27361764
GTF3C2_chr2_27320854_27361764	0/1	c0002	2736	122	45	33	24	5	14	copy fasta	GTF3C2	chr2	27320854	27361764
GTF3C2_chr2_27320854_27361764	0/0	c0003	2736	10	10	0	0	0	0	copy fasta	GTF3C2	chr2	27320854	27361764
GTF3C2_chr2_27320854_27361764	0/0	c0004	2736	4	0	0	4	0	0	copy fasta	GTF3C2	chr2	27320854	27361764
GTF3C2_chr2_27320854_27361764	0/0	c0005	2736	2	0	2	0	0	0	copy fasta	GTF3C2	chr2	27320854	27361764
GTF3C2_chr2_27320854_27361764	0/0	c0006	2736	1	1	0	0	0	0	copy fasta	GTF3C2	chr2	27320854	27361764
GTF3C2_chr2_27320854_27361764	0/0	c0007	2736	1	1	0	0	0	0	copy fasta	GTF3C2	chr2	27320854	27361764
GTF3C2_chr2_27320854_27361764	0/0	c0008	2736	1	1	0	0	0	0	copy fasta	GTF3C2	chr2	27320854	27361764
GTF3C2_chr2_27320854_27361764	0/0	c0009	2736	1	0	0	0	1	0	copy fasta	GTF3C2	chr2	27320854	27361764