JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GTPBP1_chr22_38700944_38738587	0/0	c0006	2010	1	0	1	0	0	0	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/0	c0007	2010	1	0	0	1	0	0	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/0	c0008	2010	1	1	0	0	0	0	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP1_chr22_38700944_38738587	0/0	c0009	2010	1	0	0	1	0	0	copy fasta	GTPBP1	chr22	38700944	38738587
GTPBP2_chr6_43615494_43634264	1/1	c0001	1809	289	30	64	151	11	31	copy fasta	GTPBP2	chr6	43615494	43634264
GTPBP2_chr6_43615494_43634264	0/0	c0002	1809	79	59	4	7	2	7	copy fasta	GTPBP2	chr6	43615494	43634264
GTPBP2_chr6_43615494_43634264	0/0	c0003	1809	7	7	0	0	0	0	copy fasta	GTPBP2	chr6	43615494	43634264
GTPBP2_chr6_43615494_43634264	0/0	c0004	1809	2	0	1	0	1	0	copy fasta	GTPBP2	chr6	43615494	43634264
GTPBP2_chr6_43615494_43634264	0/0	c0005	1809	1	0	0	1	0	0	copy fasta	GTPBP2	chr6	43615494	43634264
GTPBP2_chr6_43615494_43634264	0/0	c0006	1809	1	0	1	0	0	0	copy fasta	GTPBP2	chr6	43615494	43634264
GTPBP2_chr6_43615494_43634264	0/0	c0007	1809	1	1	0	0	0	0	copy fasta	GTPBP2	chr6	43615494	43634264
GTPBP2_chr6_43615494_43634264	0/0	c0008	1809	1	0	0	1	0	0	copy fasta	GTPBP2	chr6	43615494	43634264
GTPBP2_chr6_43615494_43634264	0/0	c0009	1809	1	1	0	0	0	0	copy fasta	GTPBP2	chr6	43615494	43634264
GTPBP3_chr19_17332553_17347731	0/0	c0001	1479	170	66	27	41	12	24	copy fasta	GTPBP3	chr19	17332553	17347731
GTPBP3_chr19_17332553_17347731	1/1	c0002	1479	104	7	30	47	5	13	copy fasta	GTPBP3	chr19	17332553	17347731
GTPBP3_chr19_17332553_17347731	0/0	c0003	1479	58	0	6	50	0	2	copy fasta	GTPBP3	chr19	17332553	17347731
GTPBP3_chr19_17332553_17347731	0/0	c0004	1480	20	9	2	7	1	1	copy fasta	GTPBP3	chr19	17332553	17347731
GTPBP3_chr19_17332553_17347731	0/0	c0005	1480	19	2	5	9	0	3	copy fasta	GTPBP3	chr19	17332553	17347731
GTPBP3_chr19_17332553_17347731	0/0	c0006	1479	11	11	0	0	0	0	copy fasta	GTPBP3	chr19	17332553	17347731
GTPBP3_chr19_17332553_17347731	0/0	c0007	1480	9	0	2	5	0	2	copy fasta	GTPBP3	chr19	17332553	17347731
GTPBP3_chr19_17332553_17347731	0/0	c0008	1479	4	0	0	4	0	0	copy fasta	GTPBP3	chr19	17332553	17347731
GTPBP3_chr19_17332553_17347731	0/0	c0009	1479	1	0	0	1	0	0	copy fasta	GTPBP3	chr19	17332553	17347731
GTPBP3_chr19_17332553_17347731	0/0	c0010	1479	1	0	0	1	0	0	copy fasta	GTPBP3	chr19	17332553	17347731
GTPBP3_chr19_17332553_17347731	0/0	c0011	1479	1	0	0	1	0	0	copy fasta	GTPBP3	chr19	17332553	17347731
GTPBP3_chr19_17332553_17347731	0/0	c0012	1479	1	0	0	1	0	0	copy fasta	GTPBP3	chr19	17332553	17347731
GTPBP3_chr19_17332553_17347731	0/0	c0013	1479	1	1	0	0	0	0	copy fasta	GTPBP3	chr19	17332553	17347731
GTPBP3_chr19_17332553_17347731	0/0	c0014	1479	1	0	0	0	0	1	copy fasta	GTPBP3	chr19	17332553	17347731
GTPBP3_chr19_17332553_17347731	0/0	c0015	1479	1	0	0	1	0	0	copy fasta	GTPBP3	chr19	17332553	17347731
GTPBP3_chr19_17332553_17347731	0/0	c0016	1479	1	0	1	0	0	0	copy fasta	GTPBP3	chr19	17332553	17347731
GTPBP3_chr19_17332553_17347731	0/0	c0017	1479	1	1	0	0	0	0	copy fasta	GTPBP3	chr19	17332553	17347731
GTPBP3_chr19_17332553_17347731	0/0	c0018	1479	1	0	1	0	0	0	copy fasta	GTPBP3	chr19	17332553	17347731
GTPBP3_chr19_17332553_17347731	0/0	c0019	1479	1	1	0	0	0	0	copy fasta	GTPBP3	chr19	17332553	17347731
GTPBP3_chr19_17332553_17347731	0/0	c0020	1480	1	0	0	1	0	0	copy fasta	GTPBP3	chr19	17332553	17347731
GTPBP3_chr19_17332553_17347731	0/0	c0021	1479	1	0	0	1	0	0	copy fasta	GTPBP3	chr19	17332553	17347731
GTPBP4_chr10_983434_1024932	0/0	c0001	1905	172	26	39	77	6	24	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	1/1	c0002	1905	156	53	30	52	9	10	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	c0003	1905	28	2	5	19	0	2	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	c0004	1905	2	2	0	0	0	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	c0005	1905	2	0	0	0	0	2	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	c0006	1905	2	0	0	0	0	2	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	c0007	1905	2	2	0	0	0	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	c0008	1905	1	0	0	1	0	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	c0009	1905	1	1	0	0	0	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	c0010	1905	1	1	0	0	0	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	c0011	1905	1	0	0	0	1	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	c0012	1905	1	1	0	0	0	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	c0013	1905	1	0	0	1	0	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP6_chrX_299759_323796	0/0	c0001	1551	39	0	5	28	1	5	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/1	c0002	1551	27	0	7	16	1	2	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	1/0	c0003	1551	19	7	6	3	0	2	copy fasta	GTPBP6	chrX	299759	323796