Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AKAP13_chr15_85375603_85754355	0/0	c0014	8442	5	0	3	0	2	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0015	8442	4	0	0	4	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0016	8442	3	3	0	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0017	8442	3	0	0	1	0	2	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0018	8442	3	2	1	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0019	8442	3	1	1	0	1	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0020	8442	2	2	0	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0021	8442	2	0	2	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0022	8442	2	2	0	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0023	8442	2	0	0	2	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0024	8442	2	0	0	2	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0025	8442	2	2	0	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0026	8442	2	2	0	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0027	8442	2	2	0	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0028	8442	1	0	0	0	0	1	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0029	8442	1	0	1	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0030	8442	1	0	1	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0031	8442	1	0	0	1	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0032	8442	1	1	0	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0033	8442	1	0	1	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0034	8442	1	0	0	1	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0035	8442	1	0	1	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0036	8442	1	1	0	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0037	8442	1	1	0	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0038	8442	1	1	0	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0039	8442	1	0	0	1	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0040	8442	1	1	0	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0041	8442	1	1	0	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0042	8442	1	0	0	1	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0043	8442	1	0	1	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0044	8442	1	0	0	0	1	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0045	8442	1	0	0	1	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0046	8442	1	1	0	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0047	8442	1	0	0	1	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0048	8442	1	0	1	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0049	8442	1	0	1	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0050	8442	1	0	1	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0051	8442	1	0	0	0	0	1	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0052	8442	1	0	0	1	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0053	8442	1	1	0	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0054	8442	1	0	0	1	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0055	8442	1	0	0	1	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0056	8442	1	0	0	1	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/1	c0057	8442	1	0	0	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0058	8442	1	0	0	0	0	1	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0059	8442	1	0	1	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0060	8442	1	1	0	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0061	8442	1	0	0	1	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0062	8442	1	1	0	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0063	8442	1	0	0	1	0	0	copy fasta	AKAP13	chr15	85375603	85754355