JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GTPBP6_chrX_299759_323796	0/0	c0004	1551	13	0	3	9	1	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	c0005	1551	7	2	3	2	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	c0006	1551	3	0	1	1	1	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	c0007	1551	3	0	2	0	0	1	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	c0008	1551	3	0	0	3	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	c0009	1551	3	2	1	0	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	c0010	1551	3	0	0	1	2	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	c0011	1551	3	3	0	0	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	c0012	1551	2	0	0	2	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	c0013	1551	2	1	0	1	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	c0014	1551	2	0	0	2	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	c0015	1549	1	0	0	1	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	c0016	1549	1	0	0	1	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	c0017	1552	1	0	0	1	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	c0018	1551	1	0	0	1	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	c0019	1551	1	0	0	0	0	1	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	c0020	1552	1	0	1	0	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	c0021	1551	1	0	1	0	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	c0022	1551	1	1	0	0	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	c0023	1551	1	1	0	0	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	c0024	1551	1	1	0	0	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	c0025	1551	1	0	1	0	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	c0026	1551	1	0	0	0	0	1	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	c0027	1551	1	1	0	0	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	c0028	1551	1	1	0	0	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	c0029	1551	1	1	0	0	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	c0030	1551	1	1	0	0	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	c0031	1551	1	1	0	0	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	c0032	1551	1	0	0	0	0	1	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	c0033	1552	1	0	0	1	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	c0034	1551	1	1	0	0	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	c0035	1551	1	1	0	0	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	c0036	1551	1	1	0	0	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	c0037	1551	1	0	1	0	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	c0038	1551	1	0	0	1	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	c0039	1551	1	0	1	0	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	c0040	1552	1	0	1	0	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP8_chr3_112985984_113006969	1/1	c0001	855	428	78	69	226	13	40	copy fasta	GTPBP8	chr3	112985984	113006969
GTPBP8_chr3_112985984_113006969	0/0	c0002	855	20	16	3	0	1	0	copy fasta	GTPBP8	chr3	112985984	113006969
GTPBP8_chr3_112985984_113006969	0/0	c0003	855	3	0	0	1	0	2	copy fasta	GTPBP8	chr3	112985984	113006969
GTPBP8_chr3_112985984_113006969	0/0	c0004	855	1	0	0	1	0	0	copy fasta	GTPBP8	chr3	112985984	113006969
GTSE1_chr22_46291870_46335810	0/1	c0001	2220	107	22	29	37	1	17	copy fasta	GTSE1	chr22	46291870	46335810
GTSE1_chr22_46291870_46335810	0/0	c0002	2220	16	16	0	0	0	0	copy fasta	GTSE1	chr22	46291870	46335810
GTSE1_chr22_46291870_46335810	0/0	c0003	2220	13	12	1	0	0	0	copy fasta	GTSE1	chr22	46291870	46335810
GTSE1_chr22_46291870_46335810	0/0	c0004	2220	8	1	3	0	2	2	copy fasta	GTSE1	chr22	46291870	46335810
GTSE1_chr22_46291870_46335810	0/0	c0005	2220	7	6	1	0	0	0	copy fasta	GTSE1	chr22	46291870	46335810
GTSE1_chr22_46291870_46335810	0/0	c0006	2220	6	4	2	0	0	0	copy fasta	GTSE1	chr22	46291870	46335810
GTSE1_chr22_46291870_46335810	0/0	c0007	2220	6	6	0	0	0	0	copy fasta	GTSE1	chr22	46291870	46335810
GTSE1_chr22_46291870_46335810	1/0	c0008	2220	5	1	2	0	1	0	copy fasta	GTSE1	chr22	46291870	46335810
GTSE1_chr22_46291870_46335810	0/0	c0009	2220	5	5	0	0	0	0	copy fasta	GTSE1	chr22	46291870	46335810