JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GTSE1_chr22_46291870_46335810	0/0	c0010	2220	4	4	0	0	0	0	copy fasta	GTSE1	chr22	46291870	46335810
GTSE1_chr22_46291870_46335810	0/0	c0011	2220	3	1	2	0	0	0	copy fasta	GTSE1	chr22	46291870	46335810
GTSE1_chr22_46291870_46335810	0/0	c0012	2220	2	0	0	2	0	0	copy fasta	GTSE1	chr22	46291870	46335810
GTSE1_chr22_46291870_46335810	0/0	c0013	2220	2	2	0	0	0	0	copy fasta	GTSE1	chr22	46291870	46335810
GTSE1_chr22_46291870_46335810	0/0	c0014	2220	2	2	0	0	0	0	copy fasta	GTSE1	chr22	46291870	46335810
GTSE1_chr22_46291870_46335810	0/0	c0015	2220	1	1	0	0	0	0	copy fasta	GTSE1	chr22	46291870	46335810
GTSE1_chr22_46291870_46335810	0/0	c0016	2220	1	0	0	0	0	1	copy fasta	GTSE1	chr22	46291870	46335810
GTSE1_chr22_46291870_46335810	0/0	c0017	2220	1	1	0	0	0	0	copy fasta	GTSE1	chr22	46291870	46335810
GTSE1_chr22_46291870_46335810	0/0	c0018	2220	1	0	0	1	0	0	copy fasta	GTSE1	chr22	46291870	46335810
GTSE1_chr22_46291870_46335810	0/0	c0019	2220	1	0	0	1	0	0	copy fasta	GTSE1	chr22	46291870	46335810
GTSE1_chr22_46291870_46335810	0/0	c0020	2220	1	0	0	1	0	0	copy fasta	GTSE1	chr22	46291870	46335810
GTSE1_chr22_46291870_46335810	0/0	c0021	2220	1	0	0	0	0	1	copy fasta	GTSE1	chr22	46291870	46335810
GTSE1_chr22_46291870_46335810	0/0	c0022	2220	1	1	0	0	0	0	copy fasta	GTSE1	chr22	46291870	46335810
GTSE1_chr22_46291870_46335810	0/0	c0023	2220	1	0	0	0	0	1	copy fasta	GTSE1	chr22	46291870	46335810
GTSE1_chr22_46291870_46335810	0/0	c0024	2220	1	1	0	0	0	0	copy fasta	GTSE1	chr22	46291870	46335810
GTSE1_chr22_46291870_46335810	0/0	c0025	2220	1	1	0	0	0	0	copy fasta	GTSE1	chr22	46291870	46335810
GTSE1_chr22_46291870_46335810	0/0	c0026	2220	1	1	0	0	0	0	copy fasta	GTSE1	chr22	46291870	46335810
GTSE1_chr22_46291870_46335810	0/0	c0027	2220	1	1	0	0	0	0	copy fasta	GTSE1	chr22	46291870	46335810
GTSE1_chr22_46291870_46335810	0/0	c0028	2220	1	1	0	0	0	0	copy fasta	GTSE1	chr22	46291870	46335810
GTSF1L_chr20_43721164_43732002	1/1	c0001	447	406	85	66	193	16	44	copy fasta	GTSF1L	chr20	43721164	43732002
GTSF1L_chr20_43721164_43732002	0/0	c0002	447	6	1	5	0	0	0	copy fasta	GTSF1L	chr20	43721164	43732002
GTSF1L_chr20_43721164_43732002	0/0	c0003	447	2	0	2	0	0	0	copy fasta	GTSF1L	chr20	43721164	43732002
GTSF1L_chr20_43721164_43732002	0/0	c0004	447	2	0	0	2	0	0	copy fasta	GTSF1L	chr20	43721164	43732002
GTSF1L_chr20_43721164_43732002	0/0	c0005	447	2	2	0	0	0	0	copy fasta	GTSF1L	chr20	43721164	43732002
GTSF1L_chr20_43721164_43732002	0/0	c0006	447	1	1	0	0	0	0	copy fasta	GTSF1L	chr20	43721164	43732002
GTSF1L_chr20_43721164_43732002	0/0	c0007	447	1	1	0	0	0	0	copy fasta	GTSF1L	chr20	43721164	43732002
GTSF1L_chr20_43721164_43732002	0/0	c0008	447	1	0	0	1	0	0	copy fasta	GTSF1L	chr20	43721164	43732002
GTSF1L_chr20_43721164_43732002	0/0	c0009	447	1	0	1	0	0	0	copy fasta	GTSF1L	chr20	43721164	43732002
GTSF1_chr12_54450957_54478602	1/1	c0001	504	357	86	69	146	14	40	copy fasta	GTSF1	chr12	54450957	54478602
GTSF1_chr12_54450957_54478602	0/0	c0002	504	2	2	0	0	0	0	copy fasta	GTSF1	chr12	54450957	54478602
GTSF1_chr12_54450957_54478602	0/0	c0003	504	1	0	1	0	0	0	copy fasta	GTSF1	chr12	54450957	54478602
GUCA1ANB_chr6_42150406_42168418	1/1	c0001	339	442	93	85	194	18	50	copy fasta	GUCA1ANB	chr6	42150406	42168418
GUCA1ANB_chr6_42150406_42168418	0/0	c0002	339	4	3	1	0	0	0	copy fasta	GUCA1ANB	chr6	42150406	42168418
GUCA1ANB_chr6_42150406_42168418	0/0	c0003	339	1	0	0	1	0	0	copy fasta	GUCA1ANB	chr6	42150406	42168418
GUCA1ANB_chr6_42150406_42168418	0/0	c0004	339	1	1	0	0	0	0	copy fasta	GUCA1ANB	chr6	42150406	42168418
GUCA1ANB_chr6_42150406_42168418	0/0	c0005	339	1	0	0	1	0	0	copy fasta	GUCA1ANB	chr6	42150406	42168418
GUCA1ANB_chr6_42150406_42168418	0/0	c0006	339	1	1	0	0	0	0	copy fasta	GUCA1ANB	chr6	42150406	42168418
GUCA1A_chr6_42168364_42185056	1/1	c0001	606	402	92	71	185	16	36	copy fasta	GUCA1A	chr6	42168364	42185056
GUCA1A_chr6_42168364_42185056	0/0	c0002	606	2	2	0	0	0	0	copy fasta	GUCA1A	chr6	42168364	42185056
GUCA1A_chr6_42168364_42185056	0/0	c0003	606	2	2	0	0	0	0	copy fasta	GUCA1A	chr6	42168364	42185056
GUCA1A_chr6_42168364_42185056	0/0	c0004	606	2	2	0	0	0	0	copy fasta	GUCA1A	chr6	42168364	42185056
GUCA1A_chr6_42168364_42185056	0/0	c0005	606	1	0	1	0	0	0	copy fasta	GUCA1A	chr6	42168364	42185056
GUCA1A_chr6_42168364_42185056	0/0	c0006	606	1	0	0	1	0	0	copy fasta	GUCA1A	chr6	42168364	42185056
GUCA1A_chr6_42168364_42185056	0/0	c0007	606	1	1	0	0	0	0	copy fasta	GUCA1A	chr6	42168364	42185056
GUCA1A_chr6_42168364_42185056	0/0	c0008	606	1	1	0	0	0	0	copy fasta	GUCA1A	chr6	42168364	42185056
GUCA1B_chr6_42178284_42199956	0/0	c0001	603	257	21	52	146	10	28	copy fasta	GUCA1B	chr6	42178284	42199956
GUCA1B_chr6_42178284_42199956	1/1	c0002	603	148	76	17	37	4	12	copy fasta	GUCA1B	chr6	42178284	42199956
GUCA1B_chr6_42178284_42199956	0/0	c0003	603	4	0	0	4	0	0	copy fasta	GUCA1B	chr6	42178284	42199956
GUCA1B_chr6_42178284_42199956	0/0	c0004	603	2	2	0	0	0	0	copy fasta	GUCA1B	chr6	42178284	42199956
GUCA1B_chr6_42178284_42199956	0/0	c0005	603	1	0	0	1	0	0	copy fasta	GUCA1B	chr6	42178284	42199956