JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GUCA1B_chr6_42178284_42199956	0/0	c0006	603	1	0	1	0	0	0	copy fasta	GUCA1B	chr6	42178284	42199956
GUCA1B_chr6_42178284_42199956	0/0	c0007	603	1	0	0	1	0	0	copy fasta	GUCA1B	chr6	42178284	42199956
GUCA1B_chr6_42178284_42199956	0/0	c0008	603	1	0	0	1	0	0	copy fasta	GUCA1B	chr6	42178284	42199956
GUCA1B_chr6_42178284_42199956	0/0	c0009	603	1	0	0	1	0	0	copy fasta	GUCA1B	chr6	42178284	42199956
GUCA1B_chr6_42178284_42199956	0/0	c0010	603	1	1	0	0	0	0	copy fasta	GUCA1B	chr6	42178284	42199956
GUCA1B_chr6_42178284_42199956	0/0	c0011	603	1	0	0	1	0	0	copy fasta	GUCA1B	chr6	42178284	42199956
GUCA1C_chr3_108902792_108958879	1/0	c0001	630	141	27	26	74	3	10	copy fasta	GUCA1C	chr3	108902792	108958879
GUCA1C_chr3_108902792_108958879	0/0	c0002	630	103	25	22	38	5	13	copy fasta	GUCA1C	chr3	108902792	108958879
GUCA1C_chr3_108902792_108958879	0/1	c0003	630	100	19	29	29	4	18	copy fasta	GUCA1C	chr3	108902792	108958879
GUCA1C_chr3_108902792_108958879	0/0	c0004	630	9	8	1	0	0	0	copy fasta	GUCA1C	chr3	108902792	108958879
GUCA1C_chr3_108902792_108958879	0/0	c0005	630	6	6	0	0	0	0	copy fasta	GUCA1C	chr3	108902792	108958879
GUCA1C_chr3_108902792_108958879	0/0	c0006	630	5	0	2	0	0	3	copy fasta	GUCA1C	chr3	108902792	108958879
GUCA1C_chr3_108902792_108958879	0/0	c0007	630	3	3	0	0	0	0	copy fasta	GUCA1C	chr3	108902792	108958879
GUCA1C_chr3_108902792_108958879	0/0	c0008	630	3	3	0	0	0	0	copy fasta	GUCA1C	chr3	108902792	108958879
GUCA1C_chr3_108902792_108958879	0/0	c0009	630	2	2	0	0	0	0	copy fasta	GUCA1C	chr3	108902792	108958879
GUCA1C_chr3_108902792_108958879	0/0	c0010	630	1	1	0	0	0	0	copy fasta	GUCA1C	chr3	108902792	108958879
GUCA1C_chr3_108902792_108958879	0/0	c0011	630	1	0	0	1	0	0	copy fasta	GUCA1C	chr3	108902792	108958879
GUCA2A_chr1_42157690_42169745	1/0	c0001	348	284	80	39	135	3	26	copy fasta	GUCA2A	chr1	42157690	42169745
GUCA2A_chr1_42157690_42169745	0/1	c0002	348	138	7	37	60	11	22	copy fasta	GUCA2A	chr1	42157690	42169745
GUCA2A_chr1_42157690_42169745	0/0	c0003	348	6	0	0	6	0	0	copy fasta	GUCA2A	chr1	42157690	42169745
GUCA2A_chr1_42157690_42169745	0/0	c0004	348	2	2	0	0	0	0	copy fasta	GUCA2A	chr1	42157690	42169745
GUCA2A_chr1_42157690_42169745	0/0	c0005	348	2	0	2	0	0	0	copy fasta	GUCA2A	chr1	42157690	42169745
GUCA2A_chr1_42157690_42169745	0/0	c0006	348	1	1	0	0	0	0	copy fasta	GUCA2A	chr1	42157690	42169745
GUCA2A_chr1_42157690_42169745	0/0	c0007	348	1	1	0	0	0	0	copy fasta	GUCA2A	chr1	42157690	42169745
GUCA2A_chr1_42157690_42169745	0/0	c0008	348	1	0	0	1	0	0	copy fasta	GUCA2A	chr1	42157690	42169745
GUCA2A_chr1_42157690_42169745	0/0	c0009	348	1	1	0	0	0	0	copy fasta	GUCA2A	chr1	42157690	42169745
GUCA2B_chr1_42148410_42160820	0/0	c0001	339	192	44	32	107	1	8	copy fasta	GUCA2B	chr1	42148410	42160820
GUCA2B_chr1_42148410_42160820	1/1	c0002	339	174	33	43	62	11	23	copy fasta	GUCA2B	chr1	42148410	42160820
GUCA2B_chr1_42148410_42160820	0/0	c0003	339	68	8	9	37	2	12	copy fasta	GUCA2B	chr1	42148410	42160820
GUCA2B_chr1_42148410_42160820	0/0	c0004	339	2	0	0	2	0	0	copy fasta	GUCA2B	chr1	42148410	42160820
GUCA2B_chr1_42148410_42160820	0/0	c0005	339	2	2	0	0	0	0	copy fasta	GUCA2B	chr1	42148410	42160820
GUCA2B_chr1_42148410_42160820	0/0	c0006	327	1	0	0	1	0	0	copy fasta	GUCA2B	chr1	42148410	42160820
GUCA2B_chr1_42148410_42160820	0/0	c0007	339	1	0	0	0	0	1	copy fasta	GUCA2B	chr1	42148410	42160820
GUCA2B_chr1_42148410_42160820	0/0	c0008	339	1	1	0	0	0	0	copy fasta	GUCA2B	chr1	42148410	42160820
GUCA2B_chr1_42148410_42160820	0/0	c0009	339	1	0	0	1	0	0	copy fasta	GUCA2B	chr1	42148410	42160820
GUCD1_chr22_24535438_24560138	1/1	c0001	720	409	90	76	175	18	48	copy fasta	GUCD1	chr22	24535438	24560138
GUCD1_chr22_24535438_24560138	0/0	c0002	720	3	1	0	0	0	2	copy fasta	GUCD1	chr22	24535438	24560138
GUCD1_chr22_24535438_24560138	0/0	c0003	720	1	0	0	1	0	0	copy fasta	GUCD1	chr22	24535438	24560138
GUCD1_chr22_24535438_24560138	0/0	c0004	720	1	1	0	0	0	0	copy fasta	GUCD1	chr22	24535438	24560138
GUCY1A1_chr4_155661848_155742059	0/1	c0001	2073	291	57	66	114	14	39	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	c0002	2073	12	12	0	0	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	c0003	2073	10	9	1	0	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	1/0	c0004	2073	6	5	0	0	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	c0005	2073	3	3	0	0	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	c0006	2073	2	2	0	0	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	c0007	2073	1	1	0	0	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	c0008	2073	1	0	0	1	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	c0009	2073	1	0	0	1	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	c0010	2073	1	0	1	0	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A1_chr4_155661848_155742059	0/0	c0011	2073	1	0	0	0	0	1	copy fasta	GUCY1A1	chr4	155661848	155742059