JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GUCY1A1_chr4_155661848_155742059	0/0	c0012	2073	1	1	0	0	0	0	copy fasta	GUCY1A1	chr4	155661848	155742059
GUCY1A2_chr11_106669019_107023476	1/1	c0001	2199	159	39	30	65	8	15	copy fasta	GUCY1A2	chr11	106669019	107023476
GUCY1A2_chr11_106669019_107023476	0/0	c0002	2199	31	6	10	3	4	8	copy fasta	GUCY1A2	chr11	106669019	107023476
GUCY1A2_chr11_106669019_107023476	0/0	c0003	2199	25	22	3	0	0	0	copy fasta	GUCY1A2	chr11	106669019	107023476
GUCY1A2_chr11_106669019_107023476	0/0	c0004	2199	15	1	2	3	1	8	copy fasta	GUCY1A2	chr11	106669019	107023476
GUCY1A2_chr11_106669019_107023476	0/0	c0005	2199	8	6	2	0	0	0	copy fasta	GUCY1A2	chr11	106669019	107023476
GUCY1A2_chr11_106669019_107023476	0/0	c0006	2199	6	0	2	4	0	0	copy fasta	GUCY1A2	chr11	106669019	107023476
GUCY1A2_chr11_106669019_107023476	0/0	c0007	2199	3	0	0	2	0	1	copy fasta	GUCY1A2	chr11	106669019	107023476
GUCY1A2_chr11_106669019_107023476	0/0	c0008	2199	2	0	1	1	0	0	copy fasta	GUCY1A2	chr11	106669019	107023476
GUCY1A2_chr11_106669019_107023476	0/0	c0009	2199	1	1	0	0	0	0	copy fasta	GUCY1A2	chr11	106669019	107023476
GUCY1A2_chr11_106669019_107023476	0/0	c0010	2199	1	0	0	0	0	1	copy fasta	GUCY1A2	chr11	106669019	107023476
GUCY1A2_chr11_106669019_107023476	0/0	c0011	2199	1	0	0	0	0	1	copy fasta	GUCY1A2	chr11	106669019	107023476
GUCY1A2_chr11_106669019_107023476	0/0	c0012	2199	1	0	0	0	1	0	copy fasta	GUCY1A2	chr11	106669019	107023476
GUCY1A2_chr11_106669019_107023476	0/0	c0013	2199	1	1	0	0	0	0	copy fasta	GUCY1A2	chr11	106669019	107023476
GUCY1A2_chr11_106669019_107023476	0/0	c0014	2199	1	0	0	1	0	0	copy fasta	GUCY1A2	chr11	106669019	107023476
GUCY1A2_chr11_106669019_107023476	0/0	c0015	2199	1	0	0	1	0	0	copy fasta	GUCY1A2	chr11	106669019	107023476
GUCY1B1_chr4_155754021_155812811	1/1	c0001	1860	267	71	57	93	10	34	copy fasta	GUCY1B1	chr4	155754021	155812811
GUCY1B1_chr4_155754021_155812811	0/0	c0002	1860	67	19	14	24	6	4	copy fasta	GUCY1B1	chr4	155754021	155812811
GUCY1B1_chr4_155754021_155812811	0/0	c0003	1860	12	0	4	3	2	3	copy fasta	GUCY1B1	chr4	155754021	155812811
GUCY1B1_chr4_155754021_155812811	0/0	c0004	1860	3	0	2	0	0	1	copy fasta	GUCY1B1	chr4	155754021	155812811
GUCY1B1_chr4_155754021_155812811	0/0	c0005	1860	3	0	0	3	0	0	copy fasta	GUCY1B1	chr4	155754021	155812811
GUCY1B1_chr4_155754021_155812811	0/0	c0006	1860	2	0	0	2	0	0	copy fasta	GUCY1B1	chr4	155754021	155812811
GUCY1B1_chr4_155754021_155812811	0/0	c0007	1860	2	0	0	2	0	0	copy fasta	GUCY1B1	chr4	155754021	155812811
GUCY1B1_chr4_155754021_155812811	0/0	c0008	1860	2	0	0	2	0	0	copy fasta	GUCY1B1	chr4	155754021	155812811
GUCY1B1_chr4_155754021_155812811	0/0	c0009	1860	1	0	1	0	0	0	copy fasta	GUCY1B1	chr4	155754021	155812811
GUCY1B1_chr4_155754021_155812811	0/0	c0010	1860	1	1	0	0	0	0	copy fasta	GUCY1B1	chr4	155754021	155812811
GUCY1B1_chr4_155754021_155812811	0/0	c0011	1860	1	1	0	0	0	0	copy fasta	GUCY1B1	chr4	155754021	155812811
GUCY1B1_chr4_155754021_155812811	0/0	c0012	1860	1	0	0	1	0	0	copy fasta	GUCY1B1	chr4	155754021	155812811
GUCY1B1_chr4_155754021_155812811	0/0	c0013	1860	1	0	0	1	0	0	copy fasta	GUCY1B1	chr4	155754021	155812811
GUCY1B1_chr4_155754021_155812811	0/0	c0014	1860	1	0	0	1	0	0	copy fasta	GUCY1B1	chr4	155754021	155812811
GUCY2C_chr12_14607632_14701599	0/1	c0001	3222	160	18	48	59	8	26	copy fasta	GUCY2C	chr12	14607632	14701599
GUCY2C_chr12_14607632_14701599	0/0	c0002	3222	32	29	2	1	0	0	copy fasta	GUCY2C	chr12	14607632	14701599
GUCY2C_chr12_14607632_14701599	0/0	c0003	3222	16	14	1	1	0	0	copy fasta	GUCY2C	chr12	14607632	14701599
GUCY2C_chr12_14607632_14701599	0/0	c0004	3222	6	4	0	2	0	0	copy fasta	GUCY2C	chr12	14607632	14701599
GUCY2C_chr12_14607632_14701599	0/0	c0005	3222	4	4	0	0	0	0	copy fasta	GUCY2C	chr12	14607632	14701599
GUCY2C_chr12_14607632_14701599	1/0	c0006	3222	4	3	0	0	0	0	copy fasta	GUCY2C	chr12	14607632	14701599
GUCY2C_chr12_14607632_14701599	0/0	c0007	3222	2	2	0	0	0	0	copy fasta	GUCY2C	chr12	14607632	14701599
GUCY2C_chr12_14607632_14701599	0/0	c0008	3222	1	1	0	0	0	0	copy fasta	GUCY2C	chr12	14607632	14701599
GUCY2C_chr12_14607632_14701599	0/0	c0009	3222	1	0	0	1	0	0	copy fasta	GUCY2C	chr12	14607632	14701599
GUCY2C_chr12_14607632_14701599	0/0	c0010	3222	1	0	0	1	0	0	copy fasta	GUCY2C	chr12	14607632	14701599
GUCY2C_chr12_14607632_14701599	0/0	c0011	3222	1	1	0	0	0	0	copy fasta	GUCY2C	chr12	14607632	14701599
GUCY2C_chr12_14607632_14701599	0/0	c0012	3222	1	1	0	0	0	0	copy fasta	GUCY2C	chr12	14607632	14701599
GUCY2C_chr12_14607632_14701599	0/0	c0013	3222	1	0	0	1	0	0	copy fasta	GUCY2C	chr12	14607632	14701599
GUCY2C_chr12_14607632_14701599	0/0	c0014	3222	1	0	0	1	0	0	copy fasta	GUCY2C	chr12	14607632	14701599
GUCY2C_chr12_14607632_14701599	0/0	c0015	3222	1	0	0	1	0	0	copy fasta	GUCY2C	chr12	14607632	14701599
GUCY2C_chr12_14607632_14701599	0/0	c0016	3222	1	0	0	0	0	1	copy fasta	GUCY2C	chr12	14607632	14701599
GUCY2C_chr12_14607632_14701599	0/0	c0017	3222	1	0	0	0	0	1	copy fasta	GUCY2C	chr12	14607632	14701599
GUCY2C_chr12_14607632_14701599	0/0	c0018	3222	1	0	1	0	0	0	copy fasta	GUCY2C	chr12	14607632	14701599
GUCY2C_chr12_14607632_14701599	0/0	c0019	3222	1	1	0	0	0	0	copy fasta	GUCY2C	chr12	14607632	14701599
GUCY2D_chr17_7997615_8025342	0/1	c0001	3312	176	15	29	103	6	22	copy fasta	GUCY2D	chr17	7997615	8025342