JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GUCY2D_chr17_7997615_8025342	1/0	c0002	3312	103	24	36	29	6	7	copy fasta	GUCY2D	chr17	7997615	8025342
GUCY2D_chr17_7997615_8025342	0/0	c0003	3312	44	5	1	36	0	2	copy fasta	GUCY2D	chr17	7997615	8025342
GUCY2D_chr17_7997615_8025342	0/0	c0004	3312	18	0	0	18	0	0	copy fasta	GUCY2D	chr17	7997615	8025342
GUCY2D_chr17_7997615_8025342	0/0	c0005	3312	14	2	4	0	5	3	copy fasta	GUCY2D	chr17	7997615	8025342
GUCY2D_chr17_7997615_8025342	0/0	c0006	3312	11	11	0	0	0	0	copy fasta	GUCY2D	chr17	7997615	8025342
GUCY2D_chr17_7997615_8025342	0/0	c0007	3312	11	11	0	0	0	0	copy fasta	GUCY2D	chr17	7997615	8025342
GUCY2D_chr17_7997615_8025342	0/0	c0008	3312	10	1	4	4	0	1	copy fasta	GUCY2D	chr17	7997615	8025342
GUCY2D_chr17_7997615_8025342	0/0	c0009	3312	8	4	0	0	0	4	copy fasta	GUCY2D	chr17	7997615	8025342
GUCY2D_chr17_7997615_8025342	0/0	c0010	3312	7	6	0	0	0	1	copy fasta	GUCY2D	chr17	7997615	8025342
GUCY2D_chr17_7997615_8025342	0/0	c0011	3312	5	4	1	0	0	0	copy fasta	GUCY2D	chr17	7997615	8025342
GUCY2D_chr17_7997615_8025342	0/0	c0012	3312	5	5	0	0	0	0	copy fasta	GUCY2D	chr17	7997615	8025342
GUCY2D_chr17_7997615_8025342	0/0	c0013	3312	3	0	0	3	0	0	copy fasta	GUCY2D	chr17	7997615	8025342
GUCY2D_chr17_7997615_8025342	0/0	c0014	3312	2	0	1	0	1	0	copy fasta	GUCY2D	chr17	7997615	8025342
GUCY2D_chr17_7997615_8025342	0/0	c0015	3312	1	1	0	0	0	0	copy fasta	GUCY2D	chr17	7997615	8025342
GUCY2D_chr17_7997615_8025342	0/0	c0016	3312	1	1	0	0	0	0	copy fasta	GUCY2D	chr17	7997615	8025342
GUCY2D_chr17_7997615_8025342	0/0	c0017	3312	1	1	0	0	0	0	copy fasta	GUCY2D	chr17	7997615	8025342
GUCY2D_chr17_7997615_8025342	0/0	c0018	3312	1	0	0	1	0	0	copy fasta	GUCY2D	chr17	7997615	8025342
GUCY2D_chr17_7997615_8025342	0/0	c0019	3312	1	0	1	0	0	0	copy fasta	GUCY2D	chr17	7997615	8025342
GUCY2D_chr17_7997615_8025342	0/0	c0020	3312	1	0	1	0	0	0	copy fasta	GUCY2D	chr17	7997615	8025342
GUCY2D_chr17_7997615_8025342	0/0	c0021	3312	1	1	0	0	0	0	copy fasta	GUCY2D	chr17	7997615	8025342
GUCY2D_chr17_7997615_8025342	0/0	c0022	3312	1	1	0	0	0	0	copy fasta	GUCY2D	chr17	7997615	8025342
GUCY2D_chr17_7997615_8025342	0/0	c0023	3312	1	0	0	1	0	0	copy fasta	GUCY2D	chr17	7997615	8025342
GUCY2D_chr17_7997615_8025342	0/0	c0024	3312	1	0	0	1	0	0	copy fasta	GUCY2D	chr17	7997615	8025342
GUCY2D_chr17_7997615_8025342	0/0	c0025	3312	1	0	0	1	0	0	copy fasta	GUCY2D	chr17	7997615	8025342
GUCY2D_chr17_7997615_8025342	0/0	c0026	3312	1	1	0	0	0	0	copy fasta	GUCY2D	chr17	7997615	8025342
GUCY2D_chr17_7997615_8025342	0/0	c0027	3312	1	0	0	1	0	0	copy fasta	GUCY2D	chr17	7997615	8025342
GUCY2D_chr17_7997615_8025342	0/0	c0028	3312	1	0	0	1	0	0	copy fasta	GUCY2D	chr17	7997615	8025342
GUCY2D_chr17_7997615_8025342	0/0	c0029	3312	1	0	0	1	0	0	copy fasta	GUCY2D	chr17	7997615	8025342
GUCY2F_chrX_109367906_109487086	0/0	c0001	3327	148	41	22	70	3	12	copy fasta	GUCY2F	chrX	109367906	109487086
GUCY2F_chrX_109367906_109487086	0/0	c0002	3327	28	1	8	8	2	9	copy fasta	GUCY2F	chrX	109367906	109487086
GUCY2F_chrX_109367906_109487086	1/1	c0003	3327	9	0	4	0	2	1	copy fasta	GUCY2F	chrX	109367906	109487086
GUCY2F_chrX_109367906_109487086	0/0	c0004	3327	7	0	0	7	0	0	copy fasta	GUCY2F	chrX	109367906	109487086
GUCY2F_chrX_109367906_109487086	0/0	c0005	3327	4	4	0	0	0	0	copy fasta	GUCY2F	chrX	109367906	109487086
GUCY2F_chrX_109367906_109487086	0/0	c0006	3327	4	3	0	1	0	0	copy fasta	GUCY2F	chrX	109367906	109487086
GUCY2F_chrX_109367906_109487086	0/0	c0007	3327	3	3	0	0	0	0	copy fasta	GUCY2F	chrX	109367906	109487086
GUCY2F_chrX_109367906_109487086	0/0	c0008	3327	3	3	0	0	0	0	copy fasta	GUCY2F	chrX	109367906	109487086
GUCY2F_chrX_109367906_109487086	0/0	c0009	3327	3	0	3	0	0	0	copy fasta	GUCY2F	chrX	109367906	109487086
GUCY2F_chrX_109367906_109487086	0/0	c0010	3327	2	0	0	2	0	0	copy fasta	GUCY2F	chrX	109367906	109487086
GUCY2F_chrX_109367906_109487086	0/0	c0011	3327	2	1	1	0	0	0	copy fasta	GUCY2F	chrX	109367906	109487086
GUCY2F_chrX_109367906_109487086	0/0	c0012	3327	2	2	0	0	0	0	copy fasta	GUCY2F	chrX	109367906	109487086
GUCY2F_chrX_109367906_109487086	0/0	c0013	3327	1	1	0	0	0	0	copy fasta	GUCY2F	chrX	109367906	109487086
GUCY2F_chrX_109367906_109487086	0/0	c0014	3327	1	1	0	0	0	0	copy fasta	GUCY2F	chrX	109367906	109487086
GUF1_chr4_44673420_44705928	1/1	c0001	2010	239	59	33	125	4	16	copy fasta	GUF1	chr4	44673420	44705928
GUF1_chr4_44673420_44705928	0/0	c0002	2010	137	25	37	55	6	14	copy fasta	GUF1	chr4	44673420	44705928
GUF1_chr4_44673420_44705928	0/0	c0003	2010	7	5	2	0	0	0	copy fasta	GUF1	chr4	44673420	44705928
GUF1_chr4_44673420_44705928	0/0	c0004	2010	1	0	0	1	0	0	copy fasta	GUF1	chr4	44673420	44705928
GUF1_chr4_44673420_44705928	0/0	c0005	2010	1	1	0	0	0	0	copy fasta	GUF1	chr4	44673420	44705928
GUF1_chr4_44673420_44705928	0/0	c0006	2010	1	1	0	0	0	0	copy fasta	GUF1	chr4	44673420	44705928
GUF1_chr4_44673420_44705928	0/0	c0007	2010	1	0	1	0	0	0	copy fasta	GUF1	chr4	44673420	44705928
GUF1_chr4_44673420_44705928	0/0	c0008	2032	1	0	1	0	0	0	copy fasta	GUF1	chr4	44673420	44705928