JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GUF1_chr4_44673420_44705928	0/0	c0009	2010	1	1	0	0	0	0	copy fasta	GUF1	chr4	44673420	44705928
GUF1_chr4_44673420_44705928	0/0	c0010	2010	1	0	0	1	0	0	copy fasta	GUF1	chr4	44673420	44705928
GUK1_chr1_228135279_228153951	1/1	c0001	657	355	80	75	144	15	39	copy fasta	GUK1	chr1	228135279	228153951
GUK1_chr1_228135279_228153951	0/0	c0002	657	53	11	4	35	0	3	copy fasta	GUK1	chr1	228135279	228153951
GUK1_chr1_228135279_228153951	0/0	c0003	657	5	0	1	4	0	0	copy fasta	GUK1	chr1	228135279	228153951
GUK1_chr1_228135279_228153951	0/0	c0004	657	4	4	0	0	0	0	copy fasta	GUK1	chr1	228135279	228153951
GUK1_chr1_228135279_228153951	0/0	c0005	657	1	1	0	0	0	0	copy fasta	GUK1	chr1	228135279	228153951
GUK1_chr1_228135279_228153951	0/0	c0006	657	1	0	0	1	0	0	copy fasta	GUK1	chr1	228135279	228153951
GUK1_chr1_228135279_228153951	0/0	c0007	657	1	0	0	1	0	0	copy fasta	GUK1	chr1	228135279	228153951
GUK1_chr1_228135279_228153951	0/0	c0008	657	1	0	0	0	1	0	copy fasta	GUK1	chr1	228135279	228153951
GUK1_chr1_228135279_228153951	0/0	c0009	657	1	0	0	1	0	0	copy fasta	GUK1	chr1	228135279	228153951
GULP1_chr2_188286874_188600926	1/1	c0001	915	161	75	32	26	8	18	copy fasta	GULP1	chr2	188286874	188600926
GULP1_chr2_188286874_188600926	0/0	c0002	915	1	1	0	0	0	0	copy fasta	GULP1	chr2	188286874	188600926
GUSB_chr7_65955684_65987213	0/1	c0001	1956	213	25	32	130	9	16	copy fasta	GUSB	chr7	65955684	65987213
GUSB_chr7_65955684_65987213	1/0	c0002	1956	125	50	32	24	6	12	copy fasta	GUSB	chr7	65955684	65987213
GUSB_chr7_65955684_65987213	0/0	c0003	1956	64	3	18	32	1	10	copy fasta	GUSB	chr7	65955684	65987213
GUSB_chr7_65955684_65987213	0/0	c0004	1956	3	3	0	0	0	0	copy fasta	GUSB	chr7	65955684	65987213
GUSB_chr7_65955684_65987213	0/0	c0005	1956	2	0	0	2	0	0	copy fasta	GUSB	chr7	65955684	65987213
GUSB_chr7_65955684_65987213	0/0	c0006	1956	2	2	0	0	0	0	copy fasta	GUSB	chr7	65955684	65987213
GUSB_chr7_65955684_65987213	0/0	c0007	1956	2	2	0	0	0	0	copy fasta	GUSB	chr7	65955684	65987213
GUSB_chr7_65955684_65987213	0/0	c0008	1956	1	0	0	1	0	0	copy fasta	GUSB	chr7	65955684	65987213
GUSB_chr7_65955684_65987213	0/0	c0009	1956	1	0	0	1	0	0	copy fasta	GUSB	chr7	65955684	65987213
GUSB_chr7_65955684_65987213	0/0	c0010	1956	1	1	0	0	0	0	copy fasta	GUSB	chr7	65955684	65987213
GUSB_chr7_65955684_65987213	0/0	c0011	1956	1	1	0	0	0	0	copy fasta	GUSB	chr7	65955684	65987213
GUSB_chr7_65955684_65987213	0/0	c0012	1956	1	0	0	0	0	1	copy fasta	GUSB	chr7	65955684	65987213
GUSB_chr7_65955684_65987213	0/0	c0013	1956	1	0	0	0	0	1	copy fasta	GUSB	chr7	65955684	65987213
GUSB_chr7_65955684_65987213	0/0	c0014	1956	1	1	0	0	0	0	copy fasta	GUSB	chr7	65955684	65987213
GVQW3_chr11_76376323_76413132	1/1	c0001	564	370	78	57	182	14	37	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	c0002	564	10	10	0	0	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	c0003	564	1	0	1	0	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	c0004	564	1	0	0	0	0	1	copy fasta	GVQW3	chr11	76376323	76413132
GXYLT1_chr12_42076845_42149874	1/1	c0001	1323	180	58	32	70	6	12	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	c0002	1323	127	16	22	71	4	14	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	c0003	1323	85	16	16	43	4	6	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	c0004	1284	3	1	0	2	0	0	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	c0005	1323	2	0	2	0	0	0	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	c0006	1323	1	1	0	0	0	0	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT2_chr3_72883046_72981915	1/1	c0001	1332	254	59	66	88	6	33	copy fasta	GXYLT2	chr3	72883046	72981915
GXYLT2_chr3_72883046_72981915	0/0	c0002	1332	14	14	0	0	0	0	copy fasta	GXYLT2	chr3	72883046	72981915
GXYLT2_chr3_72883046_72981915	0/0	c0003	1332	9	9	0	0	0	0	copy fasta	GXYLT2	chr3	72883046	72981915
GXYLT2_chr3_72883046_72981915	0/0	c0004	1332	8	7	1	0	0	0	copy fasta	GXYLT2	chr3	72883046	72981915
GXYLT2_chr3_72883046_72981915	0/0	c0005	1332	3	3	0	0	0	0	copy fasta	GXYLT2	chr3	72883046	72981915
GXYLT2_chr3_72883046_72981915	0/0	c0006	1332	2	2	0	0	0	0	copy fasta	GXYLT2	chr3	72883046	72981915
GXYLT2_chr3_72883046_72981915	0/0	c0007	1332	1	1	0	0	0	0	copy fasta	GXYLT2	chr3	72883046	72981915
GXYLT2_chr3_72883046_72981915	0/0	c0008	1332	1	0	1	0	0	0	copy fasta	GXYLT2	chr3	72883046	72981915
GXYLT2_chr3_72883046_72981915	0/0	c0009	1332	1	1	0	0	0	0	copy fasta	GXYLT2	chr3	72883046	72981915
GXYLT2_chr3_72883046_72981915	0/0	c0010	1332	1	1	0	0	0	0	copy fasta	GXYLT2	chr3	72883046	72981915
GXYLT2_chr3_72883046_72981915	0/0	c0011	1332	1	1	0	0	0	0	copy fasta	GXYLT2	chr3	72883046	72981915
GXYLT2_chr3_72883046_72981915	0/0	c0012	1332	1	0	0	0	0	1	copy fasta	GXYLT2	chr3	72883046	72981915
GYG1_chr3_148986540_149036775	1/1	c0001	1053	249	49	44	112	10	32	copy fasta	GYG1	chr3	148986540	149036775