JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GYG1_chr3_148986540_149036775	0/0	c0002	1053	137	27	16	72	8	14	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	c0003	1053	21	18	3	0	0	0	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	c0004	1053	3	3	0	0	0	0	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	c0005	1053	2	0	2	0	0	0	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	c0006	1053	1	1	0	0	0	0	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	c0007	1053	1	0	1	0	0	0	copy fasta	GYG1	chr3	148986540	149036775
GYG2_chrX_2823930_2887818	0/1	c0001	1413	149	7	27	84	5	25	copy fasta	GYG2	chrX	2823930	2887818
GYG2_chrX_2823930_2887818	1/0	c0002	1413	116	47	17	40	5	6	copy fasta	GYG2	chrX	2823930	2887818
GYG2_chrX_2823930_2887818	0/0	c0003	1413	11	10	1	0	0	0	copy fasta	GYG2	chrX	2823930	2887818
GYG2_chrX_2823930_2887818	0/0	c0004	1413	6	0	0	6	0	0	copy fasta	GYG2	chrX	2823930	2887818
GYG2_chrX_2823930_2887818	0/0	c0005	1413	6	4	2	0	0	0	copy fasta	GYG2	chrX	2823930	2887818
GYG2_chrX_2823930_2887818	0/0	c0006	1413	5	5	0	0	0	0	copy fasta	GYG2	chrX	2823930	2887818
GYG2_chrX_2823930_2887818	0/0	c0007	1413	4	4	0	0	0	0	copy fasta	GYG2	chrX	2823930	2887818
GYG2_chrX_2823930_2887818	0/0	c0008	1413	3	2	1	0	0	0	copy fasta	GYG2	chrX	2823930	2887818
GYG2_chrX_2823930_2887818	0/0	c0009	1413	3	0	2	0	1	0	copy fasta	GYG2	chrX	2823930	2887818
GYG2_chrX_2823930_2887818	0/0	c0010	1413	3	0	2	1	0	0	copy fasta	GYG2	chrX	2823930	2887818
GYG2_chrX_2823930_2887818	0/0	c0011	1414	1	0	0	1	0	0	copy fasta	GYG2	chrX	2823930	2887818
GYG2_chrX_2823930_2887818	0/0	c0012	1412	1	0	0	1	0	0	copy fasta	GYG2	chrX	2823930	2887818
GYG2_chrX_2823930_2887818	0/0	c0013	1413	1	1	0	0	0	0	copy fasta	GYG2	chrX	2823930	2887818
GYG2_chrX_2823930_2887818	0/0	c0014	1414	1	0	0	1	0	0	copy fasta	GYG2	chrX	2823930	2887818
GYG2_chrX_2823930_2887818	0/0	c0015	1413	1	0	0	0	0	1	copy fasta	GYG2	chrX	2823930	2887818
GYG2_chrX_2823930_2887818	0/0	c0016	1413	1	0	0	1	0	0	copy fasta	GYG2	chrX	2823930	2887818
GYG2_chrX_2823930_2887818	0/0	c0017	1413	1	0	0	0	0	1	copy fasta	GYG2	chrX	2823930	2887818
GYG2_chrX_2823930_2887818	0/0	c0018	1413	1	0	0	0	0	1	copy fasta	GYG2	chrX	2823930	2887818
GYG2_chrX_2823930_2887818	0/0	c0019	1414	1	0	1	0	0	0	copy fasta	GYG2	chrX	2823930	2887818
GYG2_chrX_2823930_2887818	0/0	c0020	1413	1	0	1	0	0	0	copy fasta	GYG2	chrX	2823930	2887818
GYPA_chr4_144104303_144145718	0/0	c0001	453	223	44	43	96	10	30	copy fasta	GYPA	chr4	144104303	144145718
GYPA_chr4_144104303_144145718	0/1	c0002	453	157	17	26	87	8	18	copy fasta	GYPA	chr4	144104303	144145718
GYPA_chr4_144104303_144145718	1/0	c0003	453	49	35	7	6	0	0	copy fasta	GYPA	chr4	144104303	144145718
GYPA_chr4_144104303_144145718	0/0	c0004	453	2	2	0	0	0	0	copy fasta	GYPA	chr4	144104303	144145718
GYPA_chr4_144104303_144145718	0/0	c0005	453	1	0	0	1	0	0	copy fasta	GYPA	chr4	144104303	144145718
GYPB_chr4_143991104_144024380	1/1	c0001	276	267	65	40	136	6	18	copy fasta	GYPB	chr4	143991104	144024380
GYPB_chr4_143991104_144024380	0/0	c0002	276	76	11	30	13	7	15	copy fasta	GYPB	chr4	143991104	144024380
GYPB_chr4_143991104_144024380	0/0	c0003	276	75	3	8	50	3	11	copy fasta	GYPB	chr4	143991104	144024380
GYPB_chr4_143991104_144024380	0/0	c0004	276	5	0	0	5	0	0	copy fasta	GYPB	chr4	143991104	144024380
GYPB_chr4_143991104_144024380	0/0	c0005	276	3	1	2	0	0	0	copy fasta	GYPB	chr4	143991104	144024380
GYPB_chr4_143991104_144024380	0/0	c0006	276	3	2	0	1	0	0	copy fasta	GYPB	chr4	143991104	144024380
GYPB_chr4_143991104_144024380	0/0	c0007	276	2	2	0	0	0	0	copy fasta	GYPB	chr4	143991104	144024380
GYPB_chr4_143991104_144024380	0/0	c0008	276	2	0	2	0	0	0	copy fasta	GYPB	chr4	143991104	144024380
GYPB_chr4_143991104_144024380	0/0	c0009	276	1	0	0	1	0	0	copy fasta	GYPB	chr4	143991104	144024380
GYPC_chr2_126651158_126701667	0/1	c0001	387	245	54	48	115	6	21	copy fasta	GYPC	chr2	126651158	126701667
GYPC_chr2_126651158_126701667	1/0	c0002	387	151	29	24	62	10	25	copy fasta	GYPC	chr2	126651158	126701667
GYPC_chr2_126651158_126701667	0/0	c0003	387	4	4	0	0	0	0	copy fasta	GYPC	chr2	126651158	126701667
GYPC_chr2_126651158_126701667	0/0	c0004	387	3	0	1	0	1	1	copy fasta	GYPC	chr2	126651158	126701667
GYPC_chr2_126651158_126701667	0/0	c0005	387	3	3	0	0	0	0	copy fasta	GYPC	chr2	126651158	126701667
GYPC_chr2_126651158_126701667	0/0	c0006	330	2	0	2	0	0	0	copy fasta	GYPC	chr2	126651158	126701667
GYPC_chr2_126651158_126701667	0/0	c0007	303	2	0	2	0	0	0	copy fasta	GYPC	chr2	126651158	126701667
GYPC_chr2_126651158_126701667	0/0	c0008	387	1	0	0	0	1	0	copy fasta	GYPC	chr2	126651158	126701667
GYPC_chr2_126651158_126701667	0/0	c0009	387	1	0	0	0	0	1	copy fasta	GYPC	chr2	126651158	126701667
GYPC_chr2_126651158_126701667	0/0	c0010	387	1	0	1	0	0	0	copy fasta	GYPC	chr2	126651158	126701667