JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GYPC_chr2_126651158_126701667	0/0	c0011	387	1	0	0	0	0	1	copy fasta	GYPC	chr2	126651158	126701667
GYPC_chr2_126651158_126701667	0/0	c0012	387	1	0	0	0	0	1	copy fasta	GYPC	chr2	126651158	126701667
GYPC_chr2_126651158_126701667	0/0	c0013	387	1	0	0	1	0	0	copy fasta	GYPC	chr2	126651158	126701667
GYPE_chr4_143865864_143910559	0/1	c0001	237	333	89	51	154	10	28	copy fasta	GYPE	chr4	143865864	143910559
GYPE_chr4_143865864_143910559	1/0	c0002	237	61	1	23	16	8	12	copy fasta	GYPE	chr4	143865864	143910559
GYPE_chr4_143865864_143910559	0/0	c0003	237	2	2	0	0	0	0	copy fasta	GYPE	chr4	143865864	143910559
GYPE_chr4_143865864_143910559	0/0	c0004	237	1	1	0	0	0	0	copy fasta	GYPE	chr4	143865864	143910559
GYPE_chr4_143865864_143910559	0/0	c0005	237	1	1	0	0	0	0	copy fasta	GYPE	chr4	143865864	143910559
GYS1_chr19_48963130_48998309	1/0	c0001	2214	270	59	58	107	10	35	copy fasta	GYS1	chr19	48963130	48998309
GYS1_chr19_48963130_48998309	0/1	c0002	2214	74	17	13	32	4	7	copy fasta	GYS1	chr19	48963130	48998309
GYS1_chr19_48963130_48998309	0/0	c0003	2214	15	2	0	10	0	3	copy fasta	GYS1	chr19	48963130	48998309
GYS1_chr19_48963130_48998309	0/0	c0004	2214	3	3	0	0	0	0	copy fasta	GYS1	chr19	48963130	48998309
GYS1_chr19_48963130_48998309	0/0	c0005	2214	2	2	0	0	0	0	copy fasta	GYS1	chr19	48963130	48998309
GYS1_chr19_48963130_48998309	0/0	c0006	2214	2	0	0	0	0	2	copy fasta	GYS1	chr19	48963130	48998309
GYS1_chr19_48963130_48998309	0/0	c0007	2214	2	1	1	0	0	0	copy fasta	GYS1	chr19	48963130	48998309
GYS1_chr19_48963130_48998309	0/0	c0008	2214	2	2	0	0	0	0	copy fasta	GYS1	chr19	48963130	48998309
GYS1_chr19_48963130_48998309	0/0	c0009	2214	2	0	0	2	0	0	copy fasta	GYS1	chr19	48963130	48998309
GYS1_chr19_48963130_48998309	0/0	c0010	2214	2	2	0	0	0	0	copy fasta	GYS1	chr19	48963130	48998309
GYS1_chr19_48963130_48998309	0/0	c0011	2214	1	0	0	1	0	0	copy fasta	GYS1	chr19	48963130	48998309
GYS1_chr19_48963130_48998309	0/0	c0012	2214	1	1	0	0	0	0	copy fasta	GYS1	chr19	48963130	48998309
GYS1_chr19_48963130_48998309	0/0	c0013	2214	1	0	0	1	0	0	copy fasta	GYS1	chr19	48963130	48998309
GYS1_chr19_48963130_48998309	0/0	c0014	2214	1	0	0	0	0	1	copy fasta	GYS1	chr19	48963130	48998309
GYS1_chr19_48963130_48998309	0/0	c0015	2214	1	1	0	0	0	0	copy fasta	GYS1	chr19	48963130	48998309
GYS1_chr19_48963130_48998309	0/0	c0016	2214	1	0	0	1	0	0	copy fasta	GYS1	chr19	48963130	48998309
GYS1_chr19_48963130_48998309	0/0	c0017	2214	1	0	1	0	0	0	copy fasta	GYS1	chr19	48963130	48998309
GYS1_chr19_48963130_48998309	0/0	c0018	2214	1	0	0	1	0	0	copy fasta	GYS1	chr19	48963130	48998309
GYS1_chr19_48963130_48998309	0/0	c0019	2214	1	1	0	0	0	0	copy fasta	GYS1	chr19	48963130	48998309
GYS1_chr19_48963130_48998309	0/0	c0020	2214	1	1	0	0	0	0	copy fasta	GYS1	chr19	48963130	48998309
GYS1_chr19_48963130_48998309	0/0	c0021	2214	1	1	0	0	0	0	copy fasta	GYS1	chr19	48963130	48998309
GYS1_chr19_48963130_48998309	0/0	c0022	2214	1	0	1	0	0	0	copy fasta	GYS1	chr19	48963130	48998309
GYS1_chr19_48963130_48998309	0/0	c0023	2214	1	0	0	0	0	1	copy fasta	GYS1	chr19	48963130	48998309
GYS1_chr19_48963130_48998309	0/0	c0024	2214	1	1	0	0	0	0	copy fasta	GYS1	chr19	48963130	48998309
GYS1_chr19_48963130_48998309	0/0	c0025	2214	1	0	0	0	0	1	copy fasta	GYS1	chr19	48963130	48998309
GYS1_chr19_48963130_48998309	0/0	c0026	2214	1	0	0	1	0	0	copy fasta	GYS1	chr19	48963130	48998309
GYS2_chr12_21531107_21609847	0/0	c0001	2112	179	31	35	76	14	23	copy fasta	GYS2	chr12	21531107	21609847
GYS2_chr12_21531107_21609847	1/1	c0002	2112	91	30	16	30	2	11	copy fasta	GYS2	chr12	21531107	21609847
GYS2_chr12_21531107_21609847	0/0	c0003	2112	10	10	0	0	0	0	copy fasta	GYS2	chr12	21531107	21609847
GYS2_chr12_21531107_21609847	0/0	c0004	2112	8	0	0	8	0	0	copy fasta	GYS2	chr12	21531107	21609847
GYS2_chr12_21531107_21609847	0/0	c0005	2112	8	8	0	0	0	0	copy fasta	GYS2	chr12	21531107	21609847
GYS2_chr12_21531107_21609847	0/0	c0006	2112	5	5	0	0	0	0	copy fasta	GYS2	chr12	21531107	21609847
GYS2_chr12_21531107_21609847	0/0	c0007	2112	3	0	2	0	0	1	copy fasta	GYS2	chr12	21531107	21609847
GYS2_chr12_21531107_21609847	0/0	c0008	2112	2	2	0	0	0	0	copy fasta	GYS2	chr12	21531107	21609847
GYS2_chr12_21531107_21609847	0/0	c0009	2112	1	0	0	1	0	0	copy fasta	GYS2	chr12	21531107	21609847
GYS2_chr12_21531107_21609847	0/0	c0010	2112	1	1	0	0	0	0	copy fasta	GYS2	chr12	21531107	21609847
GYS2_chr12_21531107_21609847	0/0	c0011	2112	1	0	0	0	0	1	copy fasta	GYS2	chr12	21531107	21609847
GYS2_chr12_21531107_21609847	0/0	c0012	2112	1	0	0	1	0	0	copy fasta	GYS2	chr12	21531107	21609847
GYS2_chr12_21531107_21609847	0/0	c0013	2112	1	1	0	0	0	0	copy fasta	GYS2	chr12	21531107	21609847
GYS2_chr12_21531107_21609847	0/0	c0014	2112	1	0	1	0	0	0	copy fasta	GYS2	chr12	21531107	21609847
GZF1_chr20_23357182_23378062	0/0	c0001	2136	206	30	34	118	10	14	copy fasta	GZF1	chr20	23357182	23378062
GZF1_chr20_23357182_23378062	1/0	c0002	2136	94	11	26	31	6	19	copy fasta	GZF1	chr20	23357182	23378062