JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GZF1_chr20_23357182_23378062	0/0	c0003	2136	47	15	3	23	0	6	copy fasta	GZF1	chr20	23357182	23378062
GZF1_chr20_23357182_23378062	0/1	c0004	2136	36	16	3	13	0	3	copy fasta	GZF1	chr20	23357182	23378062
GZF1_chr20_23357182_23378062	0/0	c0005	2136	21	1	0	20	0	0	copy fasta	GZF1	chr20	23357182	23378062
GZF1_chr20_23357182_23378062	0/0	c0006	2136	6	5	1	0	0	0	copy fasta	GZF1	chr20	23357182	23378062
GZF1_chr20_23357182_23378062	0/0	c0007	2136	6	4	2	0	0	0	copy fasta	GZF1	chr20	23357182	23378062
GZF1_chr20_23357182_23378062	0/0	c0008	2136	5	5	0	0	0	0	copy fasta	GZF1	chr20	23357182	23378062
GZF1_chr20_23357182_23378062	0/0	c0009	2136	3	2	1	0	0	0	copy fasta	GZF1	chr20	23357182	23378062
GZF1_chr20_23357182_23378062	0/0	c0010	2149	1	0	0	1	0	0	copy fasta	GZF1	chr20	23357182	23378062
GZF1_chr20_23357182_23378062	0/0	c0011	2136	1	0	0	1	0	0	copy fasta	GZF1	chr20	23357182	23378062
GZF1_chr20_23357182_23378062	0/0	c0012	2115	1	1	0	0	0	0	copy fasta	GZF1	chr20	23357182	23378062
GZF1_chr20_23357182_23378062	0/0	c0013	2136	1	0	0	1	0	0	copy fasta	GZF1	chr20	23357182	23378062
GZMA_chr5_55097646_55115252	0/1	c0001	789	262	56	45	118	11	31	copy fasta	GZMA	chr5	55097646	55115252
GZMA_chr5_55097646_55115252	0/0	c0002	789	91	22	12	49	0	8	copy fasta	GZMA	chr5	55097646	55115252
GZMA_chr5_55097646_55115252	0/0	c0003	789	15	0	0	14	0	1	copy fasta	GZMA	chr5	55097646	55115252
GZMA_chr5_55097646_55115252	1/0	c0004	789	9	5	2	0	1	0	copy fasta	GZMA	chr5	55097646	55115252
GZMA_chr5_55097646_55115252	0/0	c0005	789	8	6	0	0	2	0	copy fasta	GZMA	chr5	55097646	55115252
GZMA_chr5_55097646_55115252	0/0	c0006	789	2	0	0	2	0	0	copy fasta	GZMA	chr5	55097646	55115252
GZMA_chr5_55097646_55115252	0/0	c0007	789	1	0	0	1	0	0	copy fasta	GZMA	chr5	55097646	55115252
GZMA_chr5_55097646_55115252	0/0	c0008	789	1	0	1	0	0	0	copy fasta	GZMA	chr5	55097646	55115252
GZMA_chr5_55097646_55115252	0/0	c0009	789	1	1	0	0	0	0	copy fasta	GZMA	chr5	55097646	55115252
GZMB_chr14_24625954_24639190	0/0	c0001	744	309	49	50	164	10	36	copy fasta	GZMB	chr14	24625954	24639190
GZMB_chr14_24625954_24639190	0/1	c0002	744	102	24	17	42	8	10	copy fasta	GZMB	chr14	24625954	24639190
GZMB_chr14_24625954_24639190	0/0	c0003	744	12	12	0	0	0	0	copy fasta	GZMB	chr14	24625954	24639190
GZMB_chr14_24625954_24639190	1/0	c0004	744	11	10	0	0	0	0	copy fasta	GZMB	chr14	24625954	24639190
GZMB_chr14_24625954_24639190	0/0	c0005	744	7	2	0	5	0	0	copy fasta	GZMB	chr14	24625954	24639190
GZMB_chr14_24625954_24639190	0/0	c0006	744	3	0	0	3	0	0	copy fasta	GZMB	chr14	24625954	24639190
GZMB_chr14_24625954_24639190	0/0	c0007	744	1	0	0	0	0	1	copy fasta	GZMB	chr14	24625954	24639190
GZMB_chr14_24625954_24639190	0/0	c0008	744	1	0	0	1	0	0	copy fasta	GZMB	chr14	24625954	24639190
GZMB_chr14_24625954_24639190	0/0	c0009	744	1	0	1	0	0	0	copy fasta	GZMB	chr14	24625954	24639190
GZMB_chr14_24625954_24639190	0/0	c0010	744	1	0	0	0	0	1	copy fasta	GZMB	chr14	24625954	24639190
GZMB_chr14_24625954_24639190	0/0	c0011	744	1	0	0	1	0	0	copy fasta	GZMB	chr14	24625954	24639190
GZMB_chr14_24625954_24639190	0/0	c0012	744	1	1	0	0	0	0	copy fasta	GZMB	chr14	24625954	24639190
GZMH_chr14_24601480_24614685	1/1	c0001	741	378	78	75	166	15	42	copy fasta	GZMH	chr14	24601480	24614685
GZMH_chr14_24601480_24614685	0/0	c0002	741	22	1	5	10	3	3	copy fasta	GZMH	chr14	24601480	24614685
GZMH_chr14_24601480_24614685	0/0	c0003	741	8	8	0	0	0	0	copy fasta	GZMH	chr14	24601480	24614685
GZMH_chr14_24601480_24614685	0/0	c0004	741	4	0	0	4	0	0	copy fasta	GZMH	chr14	24601480	24614685
GZMH_chr14_24601480_24614685	0/0	c0005	741	3	0	0	3	0	0	copy fasta	GZMH	chr14	24601480	24614685
GZMH_chr14_24601480_24614685	0/0	c0006	741	2	2	0	0	0	0	copy fasta	GZMH	chr14	24601480	24614685
GZMH_chr14_24601480_24614685	0/0	c0007	741	1	0	1	0	0	0	copy fasta	GZMH	chr14	24601480	24614685
GZMH_chr14_24601480_24614685	0/0	c0008	741	1	0	1	0	0	0	copy fasta	GZMH	chr14	24601480	24614685
GZMH_chr14_24601480_24614685	0/0	c0009	741	1	0	0	0	0	1	copy fasta	GZMH	chr14	24601480	24614685
GZMH_chr14_24601480_24614685	0/0	c0010	741	1	1	0	0	0	0	copy fasta	GZMH	chr14	24601480	24614685
GZMH_chr14_24601480_24614685	0/0	c0011	741	1	0	0	1	0	0	copy fasta	GZMH	chr14	24601480	24614685
GZMK_chr5_55019256_55039570	1/1	c0001	795	424	72	79	210	18	43	copy fasta	GZMK	chr5	55019256	55039570
GZMK_chr5_55019256_55039570	0/0	c0002	795	15	0	0	14	0	1	copy fasta	GZMK	chr5	55019256	55039570
GZMK_chr5_55019256_55039570	0/0	c0003	795	14	14	0	0	0	0	copy fasta	GZMK	chr5	55019256	55039570
GZMK_chr5_55019256_55039570	0/0	c0004	795	8	7	1	0	0	0	copy fasta	GZMK	chr5	55019256	55039570
GZMK_chr5_55019256_55039570	0/0	c0005	795	1	1	0	0	0	0	copy fasta	GZMK	chr5	55019256	55039570
GZMK_chr5_55019256_55039570	0/0	c0006	795	1	1	0	0	0	0	copy fasta	GZMK	chr5	55019256	55039570
GZMK_chr5_55019256_55039570	0/0	c0007	795	1	1	0	0	0	0	copy fasta	GZMK	chr5	55019256	55039570