JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GZMM_chr19_539053_554922	0/1	c0001	774	294	63	69	121	10	30	copy fasta	GZMM	chr19	539053	554922
GZMM_chr19_539053_554922	0/0	c0002	774	38	4	0	29	1	4	copy fasta	GZMM	chr19	539053	554922
GZMM_chr19_539053_554922	0/0	c0003	774	12	1	0	10	0	1	copy fasta	GZMM	chr19	539053	554922
GZMM_chr19_539053_554922	0/0	c0004	774	10	9	1	0	0	0	copy fasta	GZMM	chr19	539053	554922
GZMM_chr19_539053_554922	0/0	c0005	774	8	8	0	0	0	0	copy fasta	GZMM	chr19	539053	554922
GZMM_chr19_539053_554922	0/0	c0006	774	7	0	2	1	2	2	copy fasta	GZMM	chr19	539053	554922
GZMM_chr19_539053_554922	0/0	c0007	774	6	1	1	4	0	0	copy fasta	GZMM	chr19	539053	554922
GZMM_chr19_539053_554922	0/0	c0008	774	5	0	0	5	0	0	copy fasta	GZMM	chr19	539053	554922
GZMM_chr19_539053_554922	0/0	c0009	774	2	0	0	0	2	0	copy fasta	GZMM	chr19	539053	554922
GZMM_chr19_539053_554922	0/0	c0010	774	2	2	0	0	0	0	copy fasta	GZMM	chr19	539053	554922
GZMM_chr19_539053_554922	1/0	c0011	774	2	0	0	0	1	0	copy fasta	GZMM	chr19	539053	554922
GZMM_chr19_539053_554922	0/0	c0012	774	2	0	0	0	0	2	copy fasta	GZMM	chr19	539053	554922
GZMM_chr19_539053_554922	0/0	c0013	774	1	1	0	0	0	0	copy fasta	GZMM	chr19	539053	554922
GZMM_chr19_539053_554922	0/0	c0014	774	1	0	0	0	0	1	copy fasta	GZMM	chr19	539053	554922
GZMM_chr19_539053_554922	0/0	c0015	731	1	0	0	1	0	0	copy fasta	GZMM	chr19	539053	554922
GZMM_chr19_539053_554922	0/0	c0016	774	1	0	0	1	0	0	copy fasta	GZMM	chr19	539053	554922
GZMM_chr19_539053_554922	0/0	c0017	774	1	0	1	0	0	0	copy fasta	GZMM	chr19	539053	554922
GZMM_chr19_539053_554922	0/0	c0018	774	1	0	0	1	0	0	copy fasta	GZMM	chr19	539053	554922
GZMM_chr19_539053_554922	0/0	c0019	774	1	0	0	1	0	0	copy fasta	GZMM	chr19	539053	554922
GZMM_chr19_539053_554922	0/0	c0020	774	1	0	0	1	0	0	copy fasta	GZMM	chr19	539053	554922
GZMM_chr19_539053_554922	0/0	c0021	774	1	1	0	0	0	0	copy fasta	GZMM	chr19	539053	554922
GZMM_chr19_539053_554922	0/0	c0022	774	1	0	0	1	0	0	copy fasta	GZMM	chr19	539053	554922
H1-0_chr22_37800229_37812432	1/1	c0001	585	358	87	70	149	14	36	copy fasta	H1-0	chr22	37800229	37812432
H1-0_chr22_37800229_37812432	0/0	c0002	585	1	1	0	0	0	0	copy fasta	H1-0	chr22	37800229	37812432
H1-0_chr22_37800229_37812432	0/0	c0003	585	1	0	0	1	0	0	copy fasta	H1-0	chr22	37800229	37812432
H1-10_chr3_129309771_129321286	1/1	c0001	642	348	87	74	139	12	34	copy fasta	H1-10	chr3	129309771	129321286
H1-10_chr3_129309771_129321286	0/0	c0002	642	44	0	6	36	0	2	copy fasta	H1-10	chr3	129309771	129321286
H1-10_chr3_129309771_129321286	0/0	c0003	642	2	2	0	0	0	0	copy fasta	H1-10	chr3	129309771	129321286
H1-10_chr3_129309771_129321286	0/0	c0004	642	1	0	0	0	0	1	copy fasta	H1-10	chr3	129309771	129321286
H1-10_chr3_129309771_129321286	0/0	c0005	642	1	1	0	0	0	0	copy fasta	H1-10	chr3	129309771	129321286
H1-10_chr3_129309771_129321286	0/0	c0006	642	1	1	0	0	0	0	copy fasta	H1-10	chr3	129309771	129321286
H1-10_chr3_129309771_129321286	0/0	c0007	642	1	0	0	1	0	0	copy fasta	H1-10	chr3	129309771	129321286
H1-10_chr3_129309771_129321286	0/0	c0008	642	1	0	0	0	0	1	copy fasta	H1-10	chr3	129309771	129321286
H1-10_chr3_129309771_129321286	0/0	c0009	642	1	1	0	0	0	0	copy fasta	H1-10	chr3	129309771	129321286
H1-1_chr6_26012032_26022787	1/1	c0001	648	312	69	54	139	13	35	copy fasta	H1-1	chr6	26012032	26022787
H1-1_chr6_26012032_26022787	0/0	c0002	648	22	12	5	2	1	2	copy fasta	H1-1	chr6	26012032	26022787
H1-1_chr6_26012032_26022787	0/0	c0003	648	19	0	3	9	0	7	copy fasta	H1-1	chr6	26012032	26022787
H1-1_chr6_26012032_26022787	0/0	c0004	648	12	1	0	9	0	2	copy fasta	H1-1	chr6	26012032	26022787
H1-1_chr6_26012032_26022787	0/0	c0005	648	11	9	2	0	0	0	copy fasta	H1-1	chr6	26012032	26022787
H1-1_chr6_26012032_26022787	0/0	c0006	648	4	0	1	0	3	0	copy fasta	H1-1	chr6	26012032	26022787
H1-1_chr6_26012032_26022787	0/0	c0007	648	3	0	2	0	1	0	copy fasta	H1-1	chr6	26012032	26022787
H1-1_chr6_26012032_26022787	0/0	c0008	648	3	2	1	0	0	0	copy fasta	H1-1	chr6	26012032	26022787
H1-1_chr6_26012032_26022787	0/0	c0009	648	2	2	0	0	0	0	copy fasta	H1-1	chr6	26012032	26022787
H1-1_chr6_26012032_26022787	0/0	c0010	648	1	0	1	0	0	0	copy fasta	H1-1	chr6	26012032	26022787
H1-1_chr6_26012032_26022787	0/0	c0011	648	1	0	0	0	0	1	copy fasta	H1-1	chr6	26012032	26022787
H1-1_chr6_26012032_26022787	0/0	c0012	648	1	1	0	0	0	0	copy fasta	H1-1	chr6	26012032	26022787
H1-1_chr6_26012032_26022787	0/0	c0013	648	1	0	0	1	0	0	copy fasta	H1-1	chr6	26012032	26022787
H1-1_chr6_26012032_26022787	0/0	c0014	648	1	0	0	0	0	1	copy fasta	H1-1	chr6	26012032	26022787
H1-1_chr6_26012032_26022787	0/0	c0015	648	1	1	0	0	0	0	copy fasta	H1-1	chr6	26012032	26022787
H1-1_chr6_26012032_26022787	0/0	c0016	648	1	0	1	0	0	0	copy fasta	H1-1	chr6	26012032	26022787