Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AKAP13_chr15_85375603_85754355	0/0	c0064	8442	1	0	0	1	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0065	8442	1	0	0	1	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0066	8442	1	1	0	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0067	8442	1	1	0	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0068	8442	1	0	0	1	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0069	8442	1	0	0	1	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP14_chrX_119890893_119925716	1/1	c0001	594	300	76	53	127	10	32	copy fasta	AKAP14	chrX	119890893	119925716
AKAP14_chrX_119890893_119925716	0/0	c0002	594	1	0	1	0	0	0	copy fasta	AKAP14	chrX	119890893	119925716
AKAP14_chrX_119890893_119925716	0/0	c0003	594	1	0	1	0	0	0	copy fasta	AKAP14	chrX	119890893	119925716
AKAP14_chrX_119890893_119925716	0/0	c0004	593	1	0	0	0	1	0	copy fasta	AKAP14	chrX	119890893	119925716
AKAP14_chrX_119890893_119925716	0/0	c0005	595	1	0	0	1	0	0	copy fasta	AKAP14	chrX	119890893	119925716
AKAP17A_chrX_1586604_1607520	0/1	c0001	2088	53	10	13	22	1	6	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	1/0	c0002	2088	36	7	11	13	1	3	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	c0003	2088	21	16	2	2	0	1	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	c0004	2088	11	1	5	3	1	1	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	c0005	2088	6	0	0	5	0	1	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	c0006	2088	2	0	0	0	0	2	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	c0007	2088	2	2	0	0	0	0	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	c0008	2087	1	0	0	0	1	0	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	c0009	2088	1	0	0	0	0	1	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	c0010	2088	1	0	0	1	0	0	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	c0011	2090	1	0	0	1	0	0	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	c0012	2088	1	1	0	0	0	0	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	c0013	2088	1	1	0	0	0	0	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	c0014	2086	1	1	0	0	0	0	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	c0015	2088	1	0	0	1	0	0	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	c0016	2087	1	0	0	1	0	0	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	c0017	2089	1	0	0	1	0	0	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	c0018	2089	1	0	1	0	0	0	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	c0019	2088	1	0	0	0	0	1	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	c0020	2088	1	1	0	0	0	0	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	c0021	2089	1	0	1	0	0	0	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	c0022	2088	1	1	0	0	0	0	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	c0023	2088	1	0	1	0	0	0	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	c0024	2089	1	0	1	0	0	0	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	c0025	2088	1	0	0	1	0	0	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	c0026	2091	1	0	1	0	0	0	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	c0027	2090	1	1	0	0	0	0	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP1_chr17_57080246_57126344	0/0	c0001	2712	184	14	34	118	1	17	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	1/1	c0002	2712	139	35	33	49	7	13	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	c0003	2712	18	1	6	2	2	7	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	c0004	2691	7	7	0	0	0	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	c0005	2712	7	7	0	0	0	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	c0006	2712	5	0	3	0	1	1	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	c0007	2712	4	2	2	0	0	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	c0008	2712	3	3	0	0	0	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	c0009	2712	3	3	0	0	0	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	c0010	2712	3	1	0	2	0	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	c0011	2712	3	0	2	0	1	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	c0012	2712	2	2	0	0	0	0	copy fasta	AKAP1	chr17	57080246	57126344