JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
H1-1_chr6_26012032_26022787	0/0	c0017	648	1	1	0	0	0	0	copy fasta	H1-1	chr6	26012032	26022787
H1-2_chr6_26050740_26061470	0/0	c0001	642	116	1	20	90	0	5	copy fasta	H1-2	chr6	26050740	26061470
H1-2_chr6_26050740_26061470	0/1	c0002	642	112	55	20	15	5	16	copy fasta	H1-2	chr6	26050740	26061470
H1-2_chr6_26050740_26061470	1/0	c0003	642	65	5	18	20	6	15	copy fasta	H1-2	chr6	26050740	26061470
H1-2_chr6_26050740_26061470	0/0	c0004	642	40	8	9	14	5	4	copy fasta	H1-2	chr6	26050740	26061470
H1-2_chr6_26050740_26061470	0/0	c0005	642	16	0	0	16	0	0	copy fasta	H1-2	chr6	26050740	26061470
H1-2_chr6_26050740_26061470	0/0	c0006	642	14	2	0	12	0	0	copy fasta	H1-2	chr6	26050740	26061470
H1-2_chr6_26050740_26061470	0/0	c0007	642	10	8	2	0	0	0	copy fasta	H1-2	chr6	26050740	26061470
H1-2_chr6_26050740_26061470	0/0	c0008	642	6	5	0	0	0	1	copy fasta	H1-2	chr6	26050740	26061470
H1-2_chr6_26050740_26061470	0/0	c0009	642	6	0	0	6	0	0	copy fasta	H1-2	chr6	26050740	26061470
H1-2_chr6_26050740_26061470	0/0	c0010	642	5	0	0	5	0	0	copy fasta	H1-2	chr6	26050740	26061470
H1-2_chr6_26050740_26061470	0/0	c0011	642	5	0	0	5	0	0	copy fasta	H1-2	chr6	26050740	26061470
H1-2_chr6_26050740_26061470	0/0	c0012	642	4	0	0	1	0	3	copy fasta	H1-2	chr6	26050740	26061470
H1-2_chr6_26050740_26061470	0/0	c0013	642	3	0	0	3	0	0	copy fasta	H1-2	chr6	26050740	26061470
H1-2_chr6_26050740_26061470	0/0	c0014	642	2	2	0	0	0	0	copy fasta	H1-2	chr6	26050740	26061470
H1-2_chr6_26050740_26061470	0/0	c0015	642	2	0	0	2	0	0	copy fasta	H1-2	chr6	26050740	26061470
H1-2_chr6_26050740_26061470	0/0	c0016	642	2	0	0	2	0	0	copy fasta	H1-2	chr6	26050740	26061470
H1-2_chr6_26050740_26061470	0/0	c0017	642	1	0	0	0	0	1	copy fasta	H1-2	chr6	26050740	26061470
H1-2_chr6_26050740_26061470	0/0	c0018	642	1	1	0	0	0	0	copy fasta	H1-2	chr6	26050740	26061470
H1-2_chr6_26050740_26061470	0/0	c0019	642	1	1	0	0	0	0	copy fasta	H1-2	chr6	26050740	26061470
H1-2_chr6_26050740_26061470	0/0	c0020	642	1	1	0	0	0	0	copy fasta	H1-2	chr6	26050740	26061470
H1-2_chr6_26050740_26061470	0/0	c0021	642	1	0	0	1	0	0	copy fasta	H1-2	chr6	26050740	26061470
H1-2_chr6_26050740_26061470	0/0	c0022	642	1	1	0	0	0	0	copy fasta	H1-2	chr6	26050740	26061470
H1-2_chr6_26050740_26061470	0/0	c0023	642	1	0	0	1	0	0	copy fasta	H1-2	chr6	26050740	26061470
H1-2_chr6_26050740_26061470	0/0	c0024	642	1	0	1	0	0	0	copy fasta	H1-2	chr6	26050740	26061470
H1-2_chr6_26050740_26061470	0/0	c0025	642	1	0	0	1	0	0	copy fasta	H1-2	chr6	26050740	26061470
H1-2_chr6_26050740_26061470	0/0	c0026	642	1	0	0	1	0	0	copy fasta	H1-2	chr6	26050740	26061470
H1-2_chr6_26050740_26061470	0/0	c0027	642	1	0	0	1	0	0	copy fasta	H1-2	chr6	26050740	26061470
H1-2_chr6_26050740_26061470	0/0	c0028	642	1	0	0	1	0	0	copy fasta	H1-2	chr6	26050740	26061470
H1-2_chr6_26050740_26061470	0/0	c0029	642	1	0	0	0	0	1	copy fasta	H1-2	chr6	26050740	26061470
H1-2_chr6_26050740_26061470	0/0	c0030	642	1	0	0	1	0	0	copy fasta	H1-2	chr6	26050740	26061470
H1-3_chr6_26229212_26239987	1/0	c0001	666	258	74	56	88	8	31	copy fasta	H1-3	chr6	26229212	26239987
H1-3_chr6_26229212_26239987	0/1	c0002	666	59	19	12	11	6	10	copy fasta	H1-3	chr6	26229212	26239987
H1-3_chr6_26229212_26239987	0/0	c0003	666	12	0	0	12	0	0	copy fasta	H1-3	chr6	26229212	26239987
H1-3_chr6_26229212_26239987	0/0	c0004	666	2	0	0	2	0	0	copy fasta	H1-3	chr6	26229212	26239987
H1-3_chr6_26229212_26239987	0/0	c0005	666	2	0	2	0	0	0	copy fasta	H1-3	chr6	26229212	26239987
H1-3_chr6_26229212_26239987	0/0	c0006	666	2	0	0	2	0	0	copy fasta	H1-3	chr6	26229212	26239987
H1-3_chr6_26229212_26239987	0/0	c0007	666	1	0	0	0	0	1	copy fasta	H1-3	chr6	26229212	26239987
H1-3_chr6_26229212_26239987	0/0	c0008	666	1	0	1	0	0	0	copy fasta	H1-3	chr6	26229212	26239987
H1-3_chr6_26229212_26239987	0/0	c0009	666	1	0	1	0	0	0	copy fasta	H1-3	chr6	26229212	26239987
H1-3_chr6_26229212_26239987	0/0	c0010	666	1	1	0	0	0	0	copy fasta	H1-3	chr6	26229212	26239987
H1-3_chr6_26229212_26239987	0/0	c0011	666	1	0	0	1	0	0	copy fasta	H1-3	chr6	26229212	26239987
H1-4_chr6_26151329_26162115	1/1	c0001	660	354	87	69	142	12	42	copy fasta	H1-4	chr6	26151329	26162115
H1-4_chr6_26151329_26162115	0/0	c0002	660	10	8	2	0	0	0	copy fasta	H1-4	chr6	26151329	26162115
H1-4_chr6_26151329_26162115	0/0	c0003	660	7	0	0	7	0	0	copy fasta	H1-4	chr6	26151329	26162115
H1-4_chr6_26151329_26162115	0/0	c0004	660	3	0	0	3	0	0	copy fasta	H1-4	chr6	26151329	26162115
H1-4_chr6_26151329_26162115	0/0	c0005	660	2	0	2	0	0	0	copy fasta	H1-4	chr6	26151329	26162115
H1-4_chr6_26151329_26162115	0/0	c0006	660	1	0	1	0	0	0	copy fasta	H1-4	chr6	26151329	26162115
H1-4_chr6_26151329_26162115	0/0	c0007	660	1	0	0	0	0	1	copy fasta	H1-4	chr6	26151329	26162115
H1-4_chr6_26151329_26162115	0/0	c0008	660	1	0	0	1	0	0	copy fasta	H1-4	chr6	26151329	26162115