JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
H1-4_chr6_26151329_26162115	0/0	c0009	660	1	0	0	1	0	0	copy fasta	H1-4	chr6	26151329	26162115
H1-4_chr6_26151329_26162115	0/0	c0010	660	1	0	0	1	0	0	copy fasta	H1-4	chr6	26151329	26162115
H1-4_chr6_26151329_26162115	0/0	c0011	660	1	0	0	1	0	0	copy fasta	H1-4	chr6	26151329	26162115
H1-4_chr6_26151329_26162115	0/0	c0012	660	1	0	0	1	0	0	copy fasta	H1-4	chr6	26151329	26162115
H1-4_chr6_26151329_26162115	0/0	c0013	660	1	0	0	1	0	0	copy fasta	H1-4	chr6	26151329	26162115
H1-4_chr6_26151329_26162115	0/0	c0014	660	1	0	0	0	0	1	copy fasta	H1-4	chr6	26151329	26162115
H1-4_chr6_26151329_26162115	0/0	c0015	660	1	0	0	1	0	0	copy fasta	H1-4	chr6	26151329	26162115
H1-4_chr6_26151329_26162115	0/0	c0016	660	1	0	0	1	0	0	copy fasta	H1-4	chr6	26151329	26162115
H1-4_chr6_26151329_26162115	0/0	c0017	660	1	1	0	0	0	0	copy fasta	H1-4	chr6	26151329	26162115
H1-5_chr6_27861792_27872588	1/1	c0001	681	298	56	48	154	7	31	copy fasta	H1-5	chr6	27861792	27872588
H1-5_chr6_27861792_27872588	0/0	c0002	681	31	1	8	18	0	4	copy fasta	H1-5	chr6	27861792	27872588
H1-5_chr6_27861792_27872588	0/0	c0003	681	15	15	0	0	0	0	copy fasta	H1-5	chr6	27861792	27872588
H1-5_chr6_27861792_27872588	0/0	c0004	681	8	8	0	0	0	0	copy fasta	H1-5	chr6	27861792	27872588
H1-5_chr6_27861792_27872588	0/0	c0005	681	8	0	7	0	1	0	copy fasta	H1-5	chr6	27861792	27872588
H1-5_chr6_27861792_27872588	0/0	c0006	681	5	4	1	0	0	0	copy fasta	H1-5	chr6	27861792	27872588
H1-5_chr6_27861792_27872588	0/0	c0007	681	5	3	2	0	0	0	copy fasta	H1-5	chr6	27861792	27872588
H1-5_chr6_27861792_27872588	0/0	c0008	681	4	0	2	1	0	1	copy fasta	H1-5	chr6	27861792	27872588
H1-5_chr6_27861792_27872588	0/0	c0009	681	3	1	0	0	0	2	copy fasta	H1-5	chr6	27861792	27872588
H1-5_chr6_27861792_27872588	0/0	c0010	681	3	0	2	1	0	0	copy fasta	H1-5	chr6	27861792	27872588
H1-5_chr6_27861792_27872588	0/0	c0011	681	2	0	2	0	0	0	copy fasta	H1-5	chr6	27861792	27872588
H1-5_chr6_27861792_27872588	0/0	c0012	681	2	2	0	0	0	0	copy fasta	H1-5	chr6	27861792	27872588
H1-5_chr6_27861792_27872588	0/0	c0013	681	2	0	0	0	0	2	copy fasta	H1-5	chr6	27861792	27872588
H1-5_chr6_27861792_27872588	0/0	c0014	681	1	0	0	1	0	0	copy fasta	H1-5	chr6	27861792	27872588
H1-5_chr6_27861792_27872588	0/0	c0015	681	1	0	0	1	0	0	copy fasta	H1-5	chr6	27861792	27872588
H1-5_chr6_27861792_27872588	0/0	c0016	681	1	0	1	0	0	0	copy fasta	H1-5	chr6	27861792	27872588
H1-5_chr6_27861792_27872588	0/0	c0017	681	1	0	1	0	0	0	copy fasta	H1-5	chr6	27861792	27872588
H1-6_chr6_26102412_26113135	1/1	c0001	624	146	56	22	41	7	18	copy fasta	H1-6	chr6	26102412	26113135
H1-6_chr6_26102412_26113135	0/0	c0002	624	95	2	15	70	0	8	copy fasta	H1-6	chr6	26102412	26113135
H1-6_chr6_26102412_26113135	0/0	c0003	624	73	12	25	16	5	15	copy fasta	H1-6	chr6	26102412	26113135
H1-6_chr6_26102412_26113135	0/0	c0004	624	58	23	8	22	2	3	copy fasta	H1-6	chr6	26102412	26113135
H1-6_chr6_26102412_26113135	0/0	c0005	624	16	0	9	7	0	0	copy fasta	H1-6	chr6	26102412	26113135
H1-6_chr6_26102412_26113135	0/0	c0006	624	3	0	0	3	0	0	copy fasta	H1-6	chr6	26102412	26113135
H1-6_chr6_26102412_26113135	0/0	c0007	624	3	2	1	0	0	0	copy fasta	H1-6	chr6	26102412	26113135
H1-6_chr6_26102412_26113135	0/0	c0008	624	1	0	0	1	0	0	copy fasta	H1-6	chr6	26102412	26113135
H1-6_chr6_26102412_26113135	0/0	c0009	624	1	0	1	0	0	0	copy fasta	H1-6	chr6	26102412	26113135
H1-6_chr6_26102412_26113135	0/0	c0010	624	1	0	0	1	0	0	copy fasta	H1-6	chr6	26102412	26113135
H1-6_chr6_26102412_26113135	0/0	c0011	510	1	1	0	0	0	0	copy fasta	H1-6	chr6	26102412	26113135
H1-6_chr6_26102412_26113135	0/0	c0012	624	1	1	0	0	0	0	copy fasta	H1-6	chr6	26102412	26113135
H1-6_chr6_26102412_26113135	0/0	c0013	624	1	0	0	1	0	0	copy fasta	H1-6	chr6	26102412	26113135
H1-6_chr6_26102412_26113135	0/0	c0014	624	1	0	0	1	0	0	copy fasta	H1-6	chr6	26102412	26113135
H1-6_chr6_26102412_26113135	0/0	c0015	624	1	1	0	0	0	0	copy fasta	H1-6	chr6	26102412	26113135
H1-6_chr6_26102412_26113135	0/0	c0016	624	1	1	0	0	0	0	copy fasta	H1-6	chr6	26102412	26113135
H1-6_chr6_26102412_26113135	0/0	c0017	624	1	0	0	0	0	1	copy fasta	H1-6	chr6	26102412	26113135
H1-6_chr6_26102412_26113135	0/0	c0018	624	1	0	0	0	0	1	copy fasta	H1-6	chr6	26102412	26113135
H1-6_chr6_26102412_26113135	0/0	c0019	624	1	0	0	1	0	0	copy fasta	H1-6	chr6	26102412	26113135
H1-6_chr6_26102412_26113135	0/0	c0020	624	1	1	0	0	0	0	copy fasta	H1-6	chr6	26102412	26113135
H1-6_chr6_26102412_26113135	0/0	c0021	624	1	0	1	0	0	0	copy fasta	H1-6	chr6	26102412	26113135
H1-7_chr12_48323980_48335279	1/1	c0001	768	220	50	40	111	3	14	copy fasta	H1-7	chr12	48323980	48335279
H1-7_chr12_48323980_48335279	0/0	c0002	768	81	29	14	25	6	7	copy fasta	H1-7	chr12	48323980	48335279
H1-7_chr12_48323980_48335279	0/0	c0003	768	78	13	18	42	1	4	copy fasta	H1-7	chr12	48323980	48335279