JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
H1-7_chr12_48323980_48335279	0/0	c0004	768	35	3	12	3	3	14	copy fasta	H1-7	chr12	48323980	48335279
H1-7_chr12_48323980_48335279	0/0	c0005	768	4	0	0	0	1	3	copy fasta	H1-7	chr12	48323980	48335279
H1-7_chr12_48323980_48335279	0/0	c0006	768	3	0	0	3	0	0	copy fasta	H1-7	chr12	48323980	48335279
H1-7_chr12_48323980_48335279	0/0	c0007	768	2	2	0	0	0	0	copy fasta	H1-7	chr12	48323980	48335279
H1-7_chr12_48323980_48335279	0/0	c0008	768	1	1	0	0	0	0	copy fasta	H1-7	chr12	48323980	48335279
H1-8_chr3_129538175_129556467	1/1	c0001	1041	231	26	49	113	15	26	copy fasta	H1-8	chr3	129538175	129556467
H1-8_chr3_129538175_129556467	0/0	c0002	1041	68	3	4	54	0	7	copy fasta	H1-8	chr3	129538175	129556467
H1-8_chr3_129538175_129556467	0/0	c0003	1041	32	15	1	12	0	4	copy fasta	H1-8	chr3	129538175	129556467
H1-8_chr3_129538175_129556467	0/0	c0004	1041	27	13	7	2	3	2	copy fasta	H1-8	chr3	129538175	129556467
H1-8_chr3_129538175_129556467	0/0	c0005	1041	12	9	3	0	0	0	copy fasta	H1-8	chr3	129538175	129556467
H1-8_chr3_129538175_129556467	0/0	c0006	1041	11	9	2	0	0	0	copy fasta	H1-8	chr3	129538175	129556467
H1-8_chr3_129538175_129556467	0/0	c0007	1042	10	1	3	3	0	3	copy fasta	H1-8	chr3	129538175	129556467
H1-8_chr3_129538175_129556467	0/0	c0008	1041	7	7	0	0	0	0	copy fasta	H1-8	chr3	129538175	129556467
H1-8_chr3_129538175_129556467	0/0	c0009	1041	6	6	0	0	0	0	copy fasta	H1-8	chr3	129538175	129556467
H1-8_chr3_129538175_129556467	0/0	c0010	1041	3	2	1	0	0	0	copy fasta	H1-8	chr3	129538175	129556467
H1-8_chr3_129538175_129556467	0/0	c0011	1041	2	0	0	0	0	2	copy fasta	H1-8	chr3	129538175	129556467
H1-8_chr3_129538175_129556467	0/0	c0012	1041	2	2	0	0	0	0	copy fasta	H1-8	chr3	129538175	129556467
H1-8_chr3_129538175_129556467	0/0	c0013	1041	2	1	1	0	0	0	copy fasta	H1-8	chr3	129538175	129556467
H1-8_chr3_129538175_129556467	0/0	c0014	1042	1	0	0	1	0	0	copy fasta	H1-8	chr3	129538175	129556467
H1-8_chr3_129538175_129556467	0/0	c0015	1041	1	0	0	1	0	0	copy fasta	H1-8	chr3	129538175	129556467
H1-8_chr3_129538175_129556467	0/0	c0016	1041	1	0	0	1	0	0	copy fasta	H1-8	chr3	129538175	129556467
H1-8_chr3_129538175_129556467	0/0	c0017	1042	1	0	1	0	0	0	copy fasta	H1-8	chr3	129538175	129556467
H1-8_chr3_129538175_129556467	0/0	c0018	1042	1	1	0	0	0	0	copy fasta	H1-8	chr3	129538175	129556467
H1-8_chr3_129538175_129556467	0/0	c0019	1042	1	1	0	0	0	0	copy fasta	H1-8	chr3	129538175	129556467
H1-8_chr3_129538175_129556467	0/0	c0020	1042	1	0	0	1	0	0	copy fasta	H1-8	chr3	129538175	129556467
H1-8_chr3_129538175_129556467	0/0	c0021	1041	1	0	0	1	0	0	copy fasta	H1-8	chr3	129538175	129556467
H1-8_chr3_129538175_129556467	0/0	c0022	1041	1	0	0	1	0	0	copy fasta	H1-8	chr3	129538175	129556467
H2AB1_chrX_154879972_154890558	0/0	c0001	348	152	52	29	52	5	14	copy fasta	H2AB1	chrX	154879972	154890558
H2AB1_chrX_154879972_154890558	0/0	c0002	348	139	2	28	87	6	16	copy fasta	H2AB1	chrX	154879972	154890558
H2AB1_chrX_154879972_154890558	0/0	c0003	348	15	14	1	0	0	0	copy fasta	H2AB1	chrX	154879972	154890558
H2AB1_chrX_154879972_154890558	0/0	c0004	348	8	8	0	0	0	0	copy fasta	H2AB1	chrX	154879972	154890558
H2AB1_chrX_154879972_154890558	0/0	c0005	345	1	1	0	0	0	0	copy fasta	H2AB1	chrX	154879972	154890558
H2AB1_chrX_154879972_154890558	0/0	c0006	347	1	0	0	1	0	0	copy fasta	H2AB1	chrX	154879972	154890558
H2AB1_chrX_154879972_154890558	0/0	c0007	348	1	0	0	1	0	0	copy fasta	H2AB1	chrX	154879972	154890558
H2AB1_chrX_154879972_154890558	0/0	c0008	348	1	1	0	0	0	0	copy fasta	H2AB1	chrX	154879972	154890558
H2AB2_chrX_155375709_155386299	0/0	c0001	348	201	65	43	66	8	19	copy fasta	H2AB2	chrX	155375709	155386299
H2AB2_chrX_155375709_155386299	0/0	c0002	348	21	1	4	11	1	4	copy fasta	H2AB2	chrX	155375709	155386299
H2AB2_chrX_155375709_155386299	0/0	c0003	348	3	3	0	0	0	0	copy fasta	H2AB2	chrX	155375709	155386299
H2AB2_chrX_155375709_155386299	0/0	c0004	348	2	0	0	0	0	2	copy fasta	H2AB2	chrX	155375709	155386299
H2AB2_chrX_155375709_155386299	0/0	c0005	348	1	0	0	1	0	0	copy fasta	H2AB2	chrX	155375709	155386299
H2AB2_chrX_155375709_155386299	0/0	c0006	348	1	0	1	0	0	0	copy fasta	H2AB2	chrX	155375709	155386299
H2AB3_chrX_155454415_155465005	0/0	c0001	348	190	50	37	84	5	14	copy fasta	H2AB3	chrX	155454415	155465005
H2AB3_chrX_155454415_155465005	0/0	c0002	348	19	1	4	4	2	8	copy fasta	H2AB3	chrX	155454415	155465005
H2AB3_chrX_155454415_155465005	0/0	c0003	348	2	2	0	0	0	0	copy fasta	H2AB3	chrX	155454415	155465005
H2AB3_chrX_155454415_155465005	0/0	c0004	348	1	1	0	0	0	0	copy fasta	H2AB3	chrX	155454415	155465005
H2AB3_chrX_155454415_155465005	0/0	c0005	348	1	0	0	0	0	1	copy fasta	H2AB3	chrX	155454415	155465005
H2AB3_chrX_155454415_155465005	0/0	c0006	348	1	1	0	0	0	0	copy fasta	H2AB3	chrX	155454415	155465005
H2AC11_chr6_27128043_27138535	1/1	c0001	393	399	87	78	178	18	36	copy fasta	H2AC11	chr6	27128043	27138535
H2AC11_chr6_27128043_27138535	0/0	c0002	393	4	4	0	0	0	0	copy fasta	H2AC11	chr6	27128043	27138535
H2AC11_chr6_27128043_27138535	0/0	c0003	393	3	3	0	0	0	0	copy fasta	H2AC11	chr6	27128043	27138535