JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
H2AC12_chr6_27142106_27152562	1/1	c0001	387	354	91	57	155	12	37	copy fasta	H2AC12	chr6	27142106	27152562
H2AC12_chr6_27142106_27152562	0/0	c0002	387	19	2	4	10	3	0	copy fasta	H2AC12	chr6	27142106	27152562
H2AC12_chr6_27142106_27152562	0/0	c0003	387	2	2	0	0	0	0	copy fasta	H2AC12	chr6	27142106	27152562
H2AC12_chr6_27142106_27152562	0/0	c0004	387	2	1	1	0	0	0	copy fasta	H2AC12	chr6	27142106	27152562
H2AC12_chr6_27142106_27152562	0/0	c0005	387	1	0	0	1	0	0	copy fasta	H2AC12	chr6	27142106	27152562
H2AC12_chr6_27142106_27152562	0/0	c0006	387	1	1	0	0	0	0	copy fasta	H2AC12	chr6	27142106	27152562
H2AC12_chr6_27142106_27152562	0/0	c0007	387	1	0	0	0	1	0	copy fasta	H2AC12	chr6	27142106	27152562
H2AC12_chr6_27142106_27152562	0/0	c0008	387	1	0	0	0	0	1	copy fasta	H2AC12	chr6	27142106	27152562
H2AC12_chr6_27142106_27152562	0/0	c0009	387	1	1	0	0	0	0	copy fasta	H2AC12	chr6	27142106	27152562
H2AC13_chr6_27803173_27813667	0/0	c0001	393	408	92	70	194	10	42	copy fasta	H2AC13	chr6	27803173	27813667
H2AC14_chr6_27809302_27819777	0/0	c0001	387	382	92	68	172	10	40	copy fasta	H2AC14	chr6	27809302	27819777
H2AC14_chr6_27809302_27819777	0/0	c0002	387	1	0	0	1	0	0	copy fasta	H2AC14	chr6	27809302	27819777
H2AC14_chr6_27809302_27819777	0/0	c0003	387	1	0	0	1	0	0	copy fasta	H2AC14	chr6	27809302	27819777
H2AC15_chr6_27832880_27843375	1/1	c0001	393	374	88	64	173	13	34	copy fasta	H2AC15	chr6	27832880	27843375
H2AC15_chr6_27832880_27843375	0/0	c0002	393	18	1	1	13	1	2	copy fasta	H2AC15	chr6	27832880	27843375
H2AC15_chr6_27832880_27843375	0/0	c0003	393	5	4	1	0	0	0	copy fasta	H2AC15	chr6	27832880	27843375
H2AC15_chr6_27832880_27843375	0/0	c0004	393	4	4	0	0	0	0	copy fasta	H2AC15	chr6	27832880	27843375
H2AC15_chr6_27832880_27843375	0/0	c0005	393	3	0	0	3	0	0	copy fasta	H2AC15	chr6	27832880	27843375
H2AC15_chr6_27832880_27843375	0/0	c0006	393	1	0	0	1	0	0	copy fasta	H2AC15	chr6	27832880	27843375
H2AC15_chr6_27832880_27843375	0/0	c0007	393	1	0	1	0	0	0	copy fasta	H2AC15	chr6	27832880	27843375
H2AC15_chr6_27832880_27843375	0/0	c0008	393	1	1	0	0	0	0	copy fasta	H2AC15	chr6	27832880	27843375
H2AC15_chr6_27832880_27843375	0/0	c0009	393	1	0	1	0	0	0	copy fasta	H2AC15	chr6	27832880	27843375
H2AC16_chr6_27860317_27870798	1/1	c0001	393	297	59	54	147	7	28	copy fasta	H2AC16	chr6	27860317	27870798
H2AC16_chr6_27860317_27870798	0/0	c0002	393	60	19	16	18	1	6	copy fasta	H2AC16	chr6	27860317	27870798
H2AC16_chr6_27860317_27870798	0/0	c0003	393	13	11	2	0	0	0	copy fasta	H2AC16	chr6	27860317	27870798
H2AC16_chr6_27860317_27870798	0/0	c0004	393	2	0	2	0	0	0	copy fasta	H2AC16	chr6	27860317	27870798
H2AC16_chr6_27860317_27870798	0/0	c0005	393	1	0	0	1	0	0	copy fasta	H2AC16	chr6	27860317	27870798
H2AC16_chr6_27860317_27870798	0/0	c0006	393	1	1	0	0	0	0	copy fasta	H2AC16	chr6	27860317	27870798
H2AC17_chr6_27887699_27898185	1/1	c0001	393	393	92	70	171	15	43	copy fasta	H2AC17	chr6	27887699	27898185
H2AC17_chr6_27887699_27898185	0/0	c0002	393	4	4	0	0	0	0	copy fasta	H2AC17	chr6	27887699	27898185
H2AC17_chr6_27887699_27898185	0/0	c0003	393	3	0	0	3	0	0	copy fasta	H2AC17	chr6	27887699	27898185
H2AC17_chr6_27887699_27898185	0/0	c0004	393	2	0	0	0	0	2	copy fasta	H2AC17	chr6	27887699	27898185
H2AC17_chr6_27887699_27898185	0/0	c0005	393	1	1	0	0	0	0	copy fasta	H2AC17	chr6	27887699	27898185
H2AC17_chr6_27887699_27898185	0/0	c0006	393	1	0	0	1	0	0	copy fasta	H2AC17	chr6	27887699	27898185
H2AC17_chr6_27887699_27898185	0/0	c0007	393	1	0	0	0	1	0	copy fasta	H2AC17	chr6	27887699	27898185
H2AC17_chr6_27887699_27898185	0/0	c0008	393	1	0	0	0	0	1	copy fasta	H2AC17	chr6	27887699	27898185
H2AC17_chr6_27887699_27898185	0/0	c0009	393	1	0	0	1	0	0	copy fasta	H2AC17	chr6	27887699	27898185
H2AC17_chr6_27887699_27898185	0/0	c0010	393	1	1	0	0	0	0	copy fasta	H2AC17	chr6	27887699	27898185
H2AC18_chr1_149837218_149847750	0/0	c0001	393	296	68	65	105	13	45	copy fasta	H2AC18	chr1	149837218	149847750
H2AC18_chr1_149837218_149847750	0/0	c0002	393	7	7	0	0	0	0	copy fasta	H2AC18	chr1	149837218	149847750
H2AC18_chr1_149837218_149847750	0/0	c0003	393	6	0	0	6	0	0	copy fasta	H2AC18	chr1	149837218	149847750
H2AC18_chr1_149837218_149847750	0/0	c0004	393	5	5	0	0	0	0	copy fasta	H2AC18	chr1	149837218	149847750
H2AC18_chr1_149837218_149847750	0/0	c0005	393	2	0	1	0	1	0	copy fasta	H2AC18	chr1	149837218	149847750
H2AC18_chr1_149837218_149847750	0/0	c0006	393	1	0	1	0	0	0	copy fasta	H2AC18	chr1	149837218	149847750
H2AC18_chr1_149837218_149847750	0/0	c0007	393	1	0	0	1	0	0	copy fasta	H2AC18	chr1	149837218	149847750
H2AC18_chr1_149837218_149847750	0/0	c0008	393	1	0	1	0	0	0	copy fasta	H2AC18	chr1	149837218	149847750
H2AC18_chr1_149837218_149847750	0/0	c0009	393	1	0	0	0	0	1	copy fasta	H2AC18	chr1	149837218	149847750
H2AC19_chr1_149846061_149856594	0/0	c0001	393	303	68	53	130	10	42	copy fasta	H2AC19	chr1	149846061	149856594
H2AC19_chr1_149846061_149856594	0/0	c0002	393	7	7	0	0	0	0	copy fasta	H2AC19	chr1	149846061	149856594
H2AC19_chr1_149846061_149856594	0/0	c0003	393	7	0	5	0	2	0	copy fasta	H2AC19	chr1	149846061	149856594