JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
H2AC19_chr1_149846061_149856594	0/0	c0004	393	5	0	0	5	0	0	copy fasta	H2AC19	chr1	149846061	149856594
H2AC19_chr1_149846061_149856594	0/0	c0005	393	5	5	0	0	0	0	copy fasta	H2AC19	chr1	149846061	149856594
H2AC19_chr1_149846061_149856594	0/0	c0006	393	1	0	0	1	0	0	copy fasta	H2AC19	chr1	149846061	149856594
H2AC1_chr6_25721063_25731562	0/0	c0001	396	177	9	33	119	6	10	copy fasta	H2AC1	chr6	25721063	25731562
H2AC1_chr6_25721063_25731562	1/1	c0002	396	146	39	23	49	7	26	copy fasta	H2AC1	chr6	25721063	25731562
H2AC1_chr6_25721063_25731562	0/0	c0003	396	86	39	13	18	5	11	copy fasta	H2AC1	chr6	25721063	25731562
H2AC1_chr6_25721063_25731562	0/0	c0004	396	2	0	1	0	0	1	copy fasta	H2AC1	chr6	25721063	25731562
H2AC1_chr6_25721063_25731562	0/0	c0005	396	1	1	0	0	0	0	copy fasta	H2AC1	chr6	25721063	25731562
H2AC1_chr6_25721063_25731562	0/0	c0006	396	1	0	0	1	0	0	copy fasta	H2AC1	chr6	25721063	25731562
H2AC1_chr6_25721063_25731562	0/0	c0007	396	1	0	0	1	0	0	copy fasta	H2AC1	chr6	25721063	25731562
H2AC20_chr1_149881918_149892411	1/1	c0001	390	357	93	61	154	10	37	copy fasta	H2AC20	chr1	149881918	149892411
H2AC20_chr1_149881918_149892411	0/0	c0002	390	9	1	7	1	0	0	copy fasta	H2AC20	chr1	149881918	149892411
H2AC20_chr1_149881918_149892411	0/0	c0003	390	1	0	0	0	0	1	copy fasta	H2AC20	chr1	149881918	149892411
H2AC20_chr1_149881918_149892411	0/0	c0004	390	1	0	0	1	0	0	copy fasta	H2AC20	chr1	149881918	149892411
H2AC21_chr1_149882469_149892965	1/1	c0001	393	362	94	70	150	10	36	copy fasta	H2AC21	chr1	149882469	149892965
H2AC25_chr1_228452364_228462873	1/1	c0001	393	434	89	75	214	16	38	copy fasta	H2AC25	chr1	228452364	228462873
H2AC25_chr1_228452364_228462873	0/0	c0002	393	5	0	3	2	0	0	copy fasta	H2AC25	chr1	228452364	228462873
H2AC25_chr1_228452364_228462873	0/0	c0003	393	3	1	2	0	0	0	copy fasta	H2AC25	chr1	228452364	228462873
H2AC4_chr6_26028092_26038618	0/1	c0001	393	252	52	44	127	11	17	copy fasta	H2AC4	chr6	26028092	26038618
H2AC4_chr6_26028092_26038618	0/0	c0002	393	76	42	11	9	4	10	copy fasta	H2AC4	chr6	26028092	26038618
H2AC4_chr6_26028092_26038618	1/0	c0003	393	75	4	23	26	3	18	copy fasta	H2AC4	chr6	26028092	26038618
H2AC4_chr6_26028092_26038618	0/0	c0004	393	1	0	0	0	0	1	copy fasta	H2AC4	chr6	26028092	26038618
H2AC4_chr6_26028092_26038618	0/0	c0005	393	1	0	0	0	0	1	copy fasta	H2AC4	chr6	26028092	26038618
H2AC4_chr6_26028092_26038618	0/0	c0006	393	1	0	0	0	0	1	copy fasta	H2AC4	chr6	26028092	26038618
H2AC6_chr6_26119172_26129690	1/1	c0001	393	363	89	61	157	11	43	copy fasta	H2AC6	chr6	26119172	26129690
H2AC6_chr6_26119172_26129690	0/0	c0002	393	24	0	13	1	3	7	copy fasta	H2AC6	chr6	26119172	26129690
H2AC6_chr6_26119172_26129690	0/0	c0003	393	7	6	1	0	0	0	copy fasta	H2AC6	chr6	26119172	26129690
H2AC6_chr6_26119172_26129690	0/0	c0004	393	1	1	0	0	0	0	copy fasta	H2AC6	chr6	26119172	26129690
H2AC6_chr6_26119172_26129690	0/0	c0005	393	1	0	1	0	0	0	copy fasta	H2AC6	chr6	26119172	26129690
H2AC7_chr6_26193784_26204293	1/0	c0001	393	318	70	63	141	12	31	copy fasta	H2AC7	chr6	26193784	26204293
H2AC7_chr6_26193784_26204293	0/0	c0002	393	48	15	7	16	5	5	copy fasta	H2AC7	chr6	26193784	26204293
H2AC7_chr6_26193784_26204293	0/1	c0003	393	20	5	4	5	1	4	copy fasta	H2AC7	chr6	26193784	26204293
H2AC7_chr6_26193784_26204293	0/0	c0004	393	12	0	0	12	0	0	copy fasta	H2AC7	chr6	26193784	26204293
H2AC7_chr6_26193784_26204293	0/0	c0005	393	2	0	0	0	0	2	copy fasta	H2AC7	chr6	26193784	26204293
H2AC7_chr6_26193784_26204293	0/0	c0006	393	1	1	0	0	0	0	copy fasta	H2AC7	chr6	26193784	26204293
H2AC7_chr6_26193784_26204293	0/0	c0007	393	1	1	0	0	0	0	copy fasta	H2AC7	chr6	26193784	26204293
H2AC8_chr6_26211921_26222437	1/1	c0001	393	360	94	66	145	14	39	copy fasta	H2AC8	chr6	26211921	26222437
H2AC8_chr6_26211921_26222437	0/0	c0002	393	1	0	0	1	0	0	copy fasta	H2AC8	chr6	26211921	26222437
H2AC8_chr6_26211921_26222437	0/0	c0003	393	1	0	0	0	0	1	copy fasta	H2AC8	chr6	26211921	26222437
H2AJ_chr12_14769405_14780024	1/1	c0001	390	450	90	84	210	16	48	copy fasta	H2AJ	chr12	14769405	14780024
H2AJ_chr12_14769405_14780024	0/0	c0002	390	1	0	0	1	0	0	copy fasta	H2AJ	chr12	14769405	14780024
H2AJ_chr12_14769405_14780024	0/0	c0003	390	1	0	0	1	0	0	copy fasta	H2AJ	chr12	14769405	14780024
H2AL3_chrX_37989272_37999904	1/0	c0001	447	238	56	31	127	5	18	copy fasta	H2AL3	chrX	37989272	37999904
H2AL3_chrX_37989272_37999904	0/0	c0002	444	48	3	15	16	6	8	copy fasta	H2AL3	chrX	37989272	37999904
H2AL3_chrX_37989272_37999904	0/1	c0003	447	32	11	10	4	0	6	copy fasta	H2AL3	chrX	37989272	37999904
H2AL3_chrX_37989272_37999904	0/0	c0004	447	6	3	3	0	0	0	copy fasta	H2AL3	chrX	37989272	37999904
H2AL3_chrX_37989272_37999904	0/0	c0005	447	3	3	0	0	0	0	copy fasta	H2AL3	chrX	37989272	37999904
H2AL3_chrX_37989272_37999904	0/0	c0006	444	1	0	1	0	0	0	copy fasta	H2AL3	chrX	37989272	37999904
H2AL3_chrX_37989272_37999904	0/0	c0007	447	1	0	0	1	0	0	copy fasta	H2AL3	chrX	37989272	37999904
H2AL3_chrX_37989272_37999904	0/0	c0008	447	1	1	0	0	0	0	copy fasta	H2AL3	chrX	37989272	37999904