JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
H2AL3_chrX_37989272_37999904	0/0	c0009	447	1	1	0	0	0	0	copy fasta	H2AL3	chrX	37989272	37999904
H2AP_chrX_37985779_37996314	1/1	c0001	354	334	74	62	154	12	30	copy fasta	H2AP	chrX	37985779	37996314
H2AP_chrX_37985779_37996314	0/0	c0002	354	3	3	0	0	0	0	copy fasta	H2AP	chrX	37985779	37996314
H2AP_chrX_37985779_37996314	0/0	c0003	354	3	0	0	0	1	2	copy fasta	H2AP	chrX	37985779	37996314
H2AX_chr11_119088874_119100465	1/1	c0001	432	430	94	76	194	18	46	copy fasta	H2AX	chr11	119088874	119100465
H2AZ1_chr4_99943088_99955275	1/1	c0001	387	410	92	76	186	12	42	copy fasta	H2AZ1	chr4	99943088	99955275
H2AZ2_chr7_44826978_44853087	1/1	c0001	387	406	94	82	170	14	44	copy fasta	H2AZ2	chr7	44826978	44853087
H2BC10_chr6_26267931_26278412	1/1	c0001	381	384	86	79	162	10	45	copy fasta	H2BC10	chr6	26267931	26278412
H2BC10_chr6_26267931_26278412	0/0	c0002	381	7	6	1	0	0	0	copy fasta	H2BC10	chr6	26267931	26278412
H2BC10_chr6_26267931_26278412	0/0	c0003	381	1	0	0	1	0	0	copy fasta	H2BC10	chr6	26267931	26278412
H2BC10_chr6_26267931_26278412	0/0	c0004	381	1	0	0	1	0	0	copy fasta	H2BC10	chr6	26267931	26278412
H2BC10_chr6_26267931_26278412	0/0	c0005	381	1	0	0	1	0	0	copy fasta	H2BC10	chr6	26267931	26278412
H2BC10_chr6_26267931_26278412	0/0	c0006	381	1	0	0	0	0	1	copy fasta	H2BC10	chr6	26267931	26278412
H2BC10_chr6_26267931_26278412	0/0	c0007	381	1	0	0	1	0	0	copy fasta	H2BC10	chr6	26267931	26278412
H2BC11_chr6_27127316_27137795	1/1	c0001	381	386	90	75	166	18	35	copy fasta	H2BC11	chr6	27127316	27137795
H2BC11_chr6_27127316_27137795	0/0	c0002	381	3	0	0	3	0	0	copy fasta	H2BC11	chr6	27127316	27137795
H2BC11_chr6_27127316_27137795	0/0	c0003	381	3	2	1	0	0	0	copy fasta	H2BC11	chr6	27127316	27137795
H2BC11_chr6_27127316_27137795	0/0	c0004	381	2	0	0	2	0	0	copy fasta	H2BC11	chr6	27127316	27137795
H2BC11_chr6_27127316_27137795	0/0	c0005	381	1	0	0	1	0	0	copy fasta	H2BC11	chr6	27127316	27137795
H2BC11_chr6_27127316_27137795	0/0	c0006	381	1	0	0	0	0	1	copy fasta	H2BC11	chr6	27127316	27137795
H2BC12L_chr21_43560182_43570648	0/0	c0001	381	172	13	34	100	8	17	copy fasta	H2BC12L	chr21	43560182	43570648
H2BC12L_chr21_43560182_43570648	0/1	c0002	381	130	22	28	50	4	25	copy fasta	H2BC12L	chr21	43560182	43570648
H2BC12L_chr21_43560182_43570648	0/0	c0003	381	69	29	7	30	0	3	copy fasta	H2BC12L	chr21	43560182	43570648
H2BC12L_chr21_43560182_43570648	0/0	c0004	381	16	15	1	0	0	0	copy fasta	H2BC12L	chr21	43560182	43570648
H2BC12L_chr21_43560182_43570648	0/0	c0005	381	5	3	2	0	0	0	copy fasta	H2BC12L	chr21	43560182	43570648
H2BC12L_chr21_43560182_43570648	0/0	c0006	381	5	3	2	0	0	0	copy fasta	H2BC12L	chr21	43560182	43570648
H2BC12L_chr21_43560182_43570648	0/0	c0007	381	3	3	0	0	0	0	copy fasta	H2BC12L	chr21	43560182	43570648
H2BC12L_chr21_43560182_43570648	0/0	c0008	381	2	0	0	2	0	0	copy fasta	H2BC12L	chr21	43560182	43570648
H2BC12L_chr21_43560182_43570648	0/0	c0009	381	2	0	2	0	0	0	copy fasta	H2BC12L	chr21	43560182	43570648
H2BC12L_chr21_43560182_43570648	0/0	c0010	381	2	0	0	2	0	0	copy fasta	H2BC12L	chr21	43560182	43570648
H2BC12L_chr21_43560182_43570648	0/0	c0011	381	1	1	0	0	0	0	copy fasta	H2BC12L	chr21	43560182	43570648
H2BC12L_chr21_43560182_43570648	0/0	c0012	381	1	1	0	0	0	0	copy fasta	H2BC12L	chr21	43560182	43570648
H2BC12L_chr21_43560182_43570648	0/0	c0013	381	1	0	0	0	0	1	copy fasta	H2BC12L	chr21	43560182	43570648
H2BC12_chr6_27141361_27151855	1/1	c0001	381	377	95	63	166	15	36	copy fasta	H2BC12	chr6	27141361	27151855
H2BC12_chr6_27141361_27151855	0/0	c0002	381	3	0	1	0	0	2	copy fasta	H2BC12	chr6	27141361	27151855
H2BC12_chr6_27141361_27151855	0/0	c0003	381	1	1	0	0	0	0	copy fasta	H2BC12	chr6	27141361	27151855
H2BC12_chr6_27141361_27151855	0/0	c0004	381	1	0	0	0	1	0	copy fasta	H2BC12	chr6	27141361	27151855
H2BC12_chr6_27141361_27151855	0/0	c0005	381	1	1	0	0	0	0	copy fasta	H2BC12	chr6	27141361	27151855
H2BC12_chr6_27141361_27151855	0/0	c0006	381	1	1	0	0	0	0	copy fasta	H2BC12	chr6	27141361	27151855
H2BC13_chr6_27802479_27812929	1/1	c0001	381	349	74	52	174	9	38	copy fasta	H2BC13	chr6	27802479	27812929
H2BC13_chr6_27802479_27812929	0/0	c0002	381	60	20	16	20	1	3	copy fasta	H2BC13	chr6	27802479	27812929
H2BC13_chr6_27802479_27812929	0/0	c0003	381	1	0	0	0	0	1	copy fasta	H2BC13	chr6	27802479	27812929
H2BC13_chr6_27802479_27812929	0/0	c0004	381	1	0	1	0	0	0	copy fasta	H2BC13	chr6	27802479	27812929
H2BC13_chr6_27802479_27812929	0/0	c0005	381	1	0	1	0	0	0	copy fasta	H2BC13	chr6	27802479	27812929
H2BC14_chr6_27810022_27820489	1/1	c0001	381	375	90	65	168	10	40	copy fasta	H2BC14	chr6	27810022	27820489
H2BC14_chr6_27810022_27820489	0/0	c0002	370	1	1	0	0	0	0	copy fasta	H2BC14	chr6	27810022	27820489
H2BC14_chr6_27810022_27820489	0/0	c0003	381	1	0	0	1	0	0	copy fasta	H2BC14	chr6	27810022	27820489
H2BC14_chr6_27810022_27820489	0/0	c0004	381	1	0	1	0	0	0	copy fasta	H2BC14	chr6	27810022	27820489
H2BC14_chr6_27810022_27820489	0/0	c0005	381	1	1	0	0	0	0	copy fasta	H2BC14	chr6	27810022	27820489
H2BC14_chr6_27810022_27820489	0/0	c0006	381	1	0	0	1	0	0	copy fasta	H2BC14	chr6	27810022	27820489