JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
H2BC15_chr6_27833569_27844110	1/1	c0001	381	416	98	68	198	14	36	copy fasta	H2BC15	chr6	27833569	27844110
H2BC17_chr6_27888425_27898891	1/1	c0001	381	410	98	70	179	16	45	copy fasta	H2BC17	chr6	27888425	27898891
H2BC17_chr6_27888425_27898891	0/0	c0002	381	1	0	0	0	0	1	copy fasta	H2BC17	chr6	27888425	27898891
H2BC17_chr6_27888425_27898891	0/0	c0003	381	1	0	0	1	0	0	copy fasta	H2BC17	chr6	27888425	27898891
H2BC18_chr1_149806879_149817370	0/0	c0001	381	357	95	68	140	16	38	copy fasta	H2BC18	chr1	149806879	149817370
H2BC18_chr1_149806879_149817370	0/0	c0002	381	3	0	0	3	0	0	copy fasta	H2BC18	chr1	149806879	149817370
H2BC18_chr1_149806879_149817370	0/0	c0003	15	1	0	0	1	0	0	copy fasta	H2BC18	chr1	149806879	149817370
H2BC18_chr1_149806879_149817370	0/0	c0004	381	1	0	1	0	0	0	copy fasta	H2BC18	chr1	149806879	149817370
H2BC18_chr1_149806879_149817370	0/0	c0005	381	1	0	1	0	0	0	copy fasta	H2BC18	chr1	149806879	149817370
H2BC18_chr1_149806879_149817370	0/0	c0006	381	1	1	0	0	0	0	copy fasta	H2BC18	chr1	149806879	149817370
H2BC1_chr6_25721777_25732345	1/1	c0001	384	210	60	32	67	12	37	copy fasta	H2BC1	chr6	25721777	25732345
H2BC1_chr6_25721777_25732345	0/0	c0002	384	173	7	35	115	6	10	copy fasta	H2BC1	chr6	25721777	25732345
H2BC1_chr6_25721777_25732345	0/0	c0003	384	10	8	2	0	0	0	copy fasta	H2BC1	chr6	25721777	25732345
H2BC1_chr6_25721777_25732345	0/0	c0004	384	7	7	0	0	0	0	copy fasta	H2BC1	chr6	25721777	25732345
H2BC1_chr6_25721777_25732345	0/0	c0005	384	4	0	0	4	0	0	copy fasta	H2BC1	chr6	25721777	25732345
H2BC1_chr6_25721777_25732345	0/0	c0006	384	4	3	1	0	0	0	copy fasta	H2BC1	chr6	25721777	25732345
H2BC1_chr6_25721777_25732345	0/0	c0007	384	4	3	0	1	0	0	copy fasta	H2BC1	chr6	25721777	25732345
H2BC1_chr6_25721777_25732345	0/0	c0008	384	3	0	0	3	0	0	copy fasta	H2BC1	chr6	25721777	25732345
H2BC1_chr6_25721777_25732345	0/0	c0009	384	1	1	0	0	0	0	copy fasta	H2BC1	chr6	25721777	25732345
H2BC1_chr6_25721777_25732345	0/0	c0010	384	1	0	0	0	0	1	copy fasta	H2BC1	chr6	25721777	25732345
H2BC1_chr6_25721777_25732345	0/0	c0011	384	1	1	0	0	0	0	copy fasta	H2BC1	chr6	25721777	25732345
H2BC21_chr1_149879459_149891682	1/1	c0001	381	364	94	67	153	12	36	copy fasta	H2BC21	chr1	149879459	149891682
H2BC21_chr1_149879459_149891682	0/0	c0002	381	1	0	1	0	0	0	copy fasta	H2BC21	chr1	149879459	149891682
H2BC21_chr1_149879459_149891682	0/0	c0003	381	1	0	0	1	0	0	copy fasta	H2BC21	chr1	149879459	149891682
H2BC26_chr1_228453103_228463558	1/1	c0001	381	434	90	84	204	16	38	copy fasta	H2BC26	chr1	228453103	228463558
H2BC26_chr1_228453103_228463558	0/0	c0002	381	11	0	0	11	0	0	copy fasta	H2BC26	chr1	228453103	228463558
H2BC26_chr1_228453103_228463558	0/0	c0003	381	1	1	0	0	0	0	copy fasta	H2BC26	chr1	228453103	228463558
H2BC26_chr1_228453103_228463558	0/0	c0004	381	1	1	0	0	0	0	copy fasta	H2BC26	chr1	228453103	228463558
H2BC26_chr1_228453103_228463558	0/0	c0005	381	1	0	0	1	0	0	copy fasta	H2BC26	chr1	228453103	228463558
H2BC3_chr6_26038227_26048713	1/0	c0001	381	412	96	74	180	16	45	copy fasta	H2BC3	chr6	26038227	26048713
H2BC3_chr6_26038227_26048713	0/0	c0002	381	6	0	0	6	0	0	copy fasta	H2BC3	chr6	26038227	26048713
H2BC3_chr6_26038227_26048713	0/0	c0003	381	1	0	0	0	0	1	copy fasta	H2BC3	chr6	26038227	26048713
H2BC4_chr6_26118467_26128926	1/1	c0001	381	401	98	73	162	16	50	copy fasta	H2BC4	chr6	26118467	26128926
H2BC4_chr6_26118467_26128926	0/0	c0002	381	1	0	1	0	0	0	copy fasta	H2BC4	chr6	26118467	26128926
H2BC5_chr6_26153122_26163607	1/1	c0001	381	364	91	78	141	12	40	copy fasta	H2BC5	chr6	26153122	26163607
H2BC5_chr6_26153122_26163607	0/0	c0002	381	11	0	0	11	0	0	copy fasta	H2BC5	chr6	26153122	26163607
H2BC5_chr6_26153122_26163607	0/0	c0003	381	2	2	0	0	0	0	copy fasta	H2BC5	chr6	26153122	26163607
H2BC5_chr6_26153122_26163607	0/0	c0004	381	2	2	0	0	0	0	copy fasta	H2BC5	chr6	26153122	26163607
H2BC5_chr6_26153122_26163607	0/0	c0005	381	1	1	0	0	0	0	copy fasta	H2BC5	chr6	26153122	26163607
H2BC6_chr6_26178761_26189230	1/1	c0001	381	171	76	37	31	7	18	copy fasta	H2BC6	chr6	26178761	26189230
H2BC6_chr6_26178761_26189230	0/0	c0002	381	168	2	22	129	2	13	copy fasta	H2BC6	chr6	26178761	26189230
H2BC6_chr6_26178761_26189230	0/0	c0003	381	27	1	3	15	3	5	copy fasta	H2BC6	chr6	26178761	26189230
H2BC6_chr6_26178761_26189230	0/0	c0004	381	15	13	2	0	0	0	copy fasta	H2BC6	chr6	26178761	26189230
H2BC6_chr6_26178761_26189230	0/0	c0005	381	2	2	0	0	0	0	copy fasta	H2BC6	chr6	26178761	26189230
H2BC6_chr6_26178761_26189230	0/0	c0006	381	1	0	0	0	0	1	copy fasta	H2BC6	chr6	26178761	26189230
H2BC6_chr6_26178761_26189230	0/0	c0007	381	1	0	0	0	1	0	copy fasta	H2BC6	chr6	26178761	26189230
H2BC6_chr6_26178761_26189230	0/0	c0008	381	1	0	0	0	0	1	copy fasta	H2BC6	chr6	26178761	26189230
H2BC6_chr6_26178761_26189230	0/0	c0009	381	1	0	0	0	1	0	copy fasta	H2BC6	chr6	26178761	26189230
H2BC6_chr6_26178761_26189230	0/0	c0010	381	1	0	0	1	0	0	copy fasta	H2BC6	chr6	26178761	26189230
H2BC7_chr6_26194516_26204988	0/0	c0001	381	213	24	28	140	4	17	copy fasta	H2BC7	chr6	26194516	26204988