JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
H2BC7_chr6_26194516_26204988	1/0	c0002	381	97	45	24	11	4	12	copy fasta	H2BC7	chr6	26194516	26204988
H2BC7_chr6_26194516_26204988	0/1	c0003	381	70	21	11	20	6	11	copy fasta	H2BC7	chr6	26194516	26204988
H2BC7_chr6_26194516_26204988	0/0	c0004	381	7	0	5	0	0	2	copy fasta	H2BC7	chr6	26194516	26204988
H2BC7_chr6_26194516_26204988	0/0	c0005	381	5	0	2	0	3	0	copy fasta	H2BC7	chr6	26194516	26204988
H2BC7_chr6_26194516_26204988	0/0	c0006	381	5	0	4	0	1	0	copy fasta	H2BC7	chr6	26194516	26204988
H2BC7_chr6_26194516_26204988	0/0	c0007	381	3	0	0	3	0	0	copy fasta	H2BC7	chr6	26194516	26204988
H2BC8_chr6_26211200_26221688	1/0	c0001	381	287	72	53	122	10	29	copy fasta	H2BC8	chr6	26211200	26221688
H2BC8_chr6_26211200_26221688	0/0	c0002	381	40	15	7	10	3	5	copy fasta	H2BC8	chr6	26211200	26221688
H2BC8_chr6_26211200_26221688	0/1	c0003	381	24	6	6	4	1	6	copy fasta	H2BC8	chr6	26211200	26221688
H2BC8_chr6_26211200_26221688	0/0	c0004	381	12	0	0	12	0	0	copy fasta	H2BC8	chr6	26211200	26221688
H2BC8_chr6_26211200_26221688	0/0	c0005	381	3	3	0	0	0	0	copy fasta	H2BC8	chr6	26211200	26221688
H2BC9_chr6_26246614_26257075	1/1	c0001	381	367	89	68	150	14	44	copy fasta	H2BC9	chr6	26246614	26257075
H2BC9_chr6_26246614_26257075	0/0	c0002	381	10	8	2	0	0	0	copy fasta	H2BC9	chr6	26246614	26257075
H2BC9_chr6_26246614_26257075	0/0	c0003	381	1	1	0	0	0	0	copy fasta	H2BC9	chr6	26246614	26257075
H2BK1_chr7_151202837_151215488	1/1	c0001	369	349	75	76	148	12	36	copy fasta	H2BK1	chr7	151202837	151215488
H2BK1_chr7_151202837_151215488	0/0	c0002	369	49	12	2	23	2	10	copy fasta	H2BK1	chr7	151202837	151215488
H2BK1_chr7_151202837_151215488	0/0	c0003	369	6	4	2	0	0	0	copy fasta	H2BK1	chr7	151202837	151215488
H2BK1_chr7_151202837_151215488	0/0	c0004	369	3	3	0	0	0	0	copy fasta	H2BK1	chr7	151202837	151215488
H2BK1_chr7_151202837_151215488	0/0	c0005	369	1	1	0	0	0	0	copy fasta	H2BK1	chr7	151202837	151215488
H2BK1_chr7_151202837_151215488	0/0	c0006	369	1	0	0	1	0	0	copy fasta	H2BK1	chr7	151202837	151215488
H2BK1_chr7_151202837_151215488	0/0	c0007	369	1	1	0	0	0	0	copy fasta	H2BK1	chr7	151202837	151215488
H2BN1_chr17_32890433_32911586	1/1	c0001	357	411	79	83	185	16	46	copy fasta	H2BN1	chr17	32890433	32911586
H2BN1_chr17_32890433_32911586	0/0	c0002	357	12	12	0	0	0	0	copy fasta	H2BN1	chr17	32890433	32911586
H2BN1_chr17_32890433_32911586	0/0	c0003	357	1	0	0	1	0	0	copy fasta	H2BN1	chr17	32890433	32911586
H2BN1_chr17_32890433_32911586	0/0	c0004	357	1	1	0	0	0	0	copy fasta	H2BN1	chr17	32890433	32911586
H2BN1_chr17_32890433_32911586	0/0	c0005	411	1	0	1	0	0	0	copy fasta	H2BN1	chr17	32890433	32911586
H2BW1_chrX_104006147_104018708	1/1	c0001	444	184	42	24	89	12	15	copy fasta	H2BW1	chrX	104006147	104018708
H2BW1_chrX_104006147_104018708	0/0	c0002	444	140	31	31	60	1	17	copy fasta	H2BW1	chrX	104006147	104018708
H2BW1_chrX_104006147_104018708	0/0	c0003	444	1	0	1	0	0	0	copy fasta	H2BW1	chrX	104006147	104018708
H2BW1_chrX_104006147_104018708	0/0	c0004	443	1	0	0	1	0	0	copy fasta	H2BW1	chrX	104006147	104018708
H2BW1_chrX_104006147_104018708	0/0	c0005	444	1	1	0	0	0	0	copy fasta	H2BW1	chrX	104006147	104018708
H2BW1_chrX_104006147_104018708	0/0	c0006	444	1	0	0	1	0	0	copy fasta	H2BW1	chrX	104006147	104018708
H2BW1_chrX_104006147_104018708	0/0	c0007	446	1	0	0	1	0	0	copy fasta	H2BW1	chrX	104006147	104018708
H2BW1_chrX_104006147_104018708	0/0	c0008	444	1	0	1	0	0	0	copy fasta	H2BW1	chrX	104006147	104018708
H2BW2_chrX_104034956_104047454	1/1	c0001	447	210	65	40	82	3	18	copy fasta	H2BW2	chrX	104034956	104047454
H2BW2_chrX_104034956_104047454	0/0	c0002	447	110	5	21	63	8	13	copy fasta	H2BW2	chrX	104034956	104047454
H2BW2_chrX_104034956_104047454	0/0	c0003	447	6	0	0	6	0	0	copy fasta	H2BW2	chrX	104034956	104047454
H2BW2_chrX_104034956_104047454	0/0	c0004	447	1	1	0	0	0	0	copy fasta	H2BW2	chrX	104034956	104047454
H2BW2_chrX_104034956_104047454	0/0	c0005	449	1	0	0	1	0	0	copy fasta	H2BW2	chrX	104034956	104047454
H2BW2_chrX_104034956_104047454	0/0	c0006	447	1	1	0	0	0	0	copy fasta	H2BW2	chrX	104034956	104047454
H2BW2_chrX_104034956_104047454	0/0	c0007	447	1	0	0	1	0	0	copy fasta	H2BW2	chrX	104034956	104047454
H2BW2_chrX_104034956_104047454	0/0	c0008	447	1	0	0	1	0	0	copy fasta	H2BW2	chrX	104034956	104047454
H2BW2_chrX_104034956_104047454	0/0	c0009	447	1	0	0	1	0	0	copy fasta	H2BW2	chrX	104034956	104047454
H3-3A_chr1_226057716_226077019	0/0	c0001	411	433	94	76	197	18	48	copy fasta	H3-3A	chr1	226057716	226077019
H3-3A_chr1_226057716_226077019	0/0	c0002	411	1	0	0	1	0	0	copy fasta	H3-3A	chr1	226057716	226077019
H3-3B_chr17_75771434_75784779	1/1	c0001	411	417	83	72	206	15	39	copy fasta	H3-3B	chr17	75771434	75784779
H3-3B_chr17_75771434_75784779	0/0	c0002	411	7	7	0	0	0	0	copy fasta	H3-3B	chr17	75771434	75784779
H3-3B_chr17_75771434_75784779	0/0	c0003	411	6	5	0	0	0	1	copy fasta	H3-3B	chr17	75771434	75784779
H3-3B_chr17_75771434_75784779	0/0	c0004	411	1	0	0	0	1	0	copy fasta	H3-3B	chr17	75771434	75784779
H3-3B_chr17_75771434_75784779	0/0	c0005	411	1	1	0	0	0	0	copy fasta	H3-3B	chr17	75771434	75784779