JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
H3-4_chr1_228419845_228430360	0/0	c0001	411	242	21	58	123	9	31	copy fasta	H3-4	chr1	228419845	228430360
H3-4_chr1_228419845_228430360	1/1	c0002	411	123	65	5	44	4	3	copy fasta	H3-4	chr1	228419845	228430360
H3-4_chr1_228419845_228430360	0/0	c0003	411	18	0	4	5	3	6	copy fasta	H3-4	chr1	228419845	228430360
H3-4_chr1_228419845_228430360	0/0	c0004	411	9	0	0	9	0	0	copy fasta	H3-4	chr1	228419845	228430360
H3-4_chr1_228419845_228430360	0/0	c0005	411	7	6	1	0	0	0	copy fasta	H3-4	chr1	228419845	228430360
H3-4_chr1_228419845_228430360	0/0	c0006	411	5	5	0	0	0	0	copy fasta	H3-4	chr1	228419845	228430360
H3-4_chr1_228419845_228430360	0/0	c0007	411	4	0	0	4	0	0	copy fasta	H3-4	chr1	228419845	228430360
H3-4_chr1_228419845_228430360	0/0	c0008	411	2	2	0	0	0	0	copy fasta	H3-4	chr1	228419845	228430360
H3-4_chr1_228419845_228430360	0/0	c0009	411	1	0	0	1	0	0	copy fasta	H3-4	chr1	228419845	228430360
H3-4_chr1_228419845_228430360	0/0	c0010	411	1	0	1	0	0	0	copy fasta	H3-4	chr1	228419845	228430360
H3-4_chr1_228419845_228430360	0/0	c0011	411	1	1	0	0	0	0	copy fasta	H3-4	chr1	228419845	228430360
H3-4_chr1_228419845_228430360	0/0	c0012	411	1	0	1	0	0	0	copy fasta	H3-4	chr1	228419845	228430360
H3-5_chr12_31786185_31797298	1/1	c0001	408	367	61	68	188	14	34	copy fasta	H3-5	chr12	31786185	31797298
H3-5_chr12_31786185_31797298	0/0	c0002	408	52	9	6	26	0	11	copy fasta	H3-5	chr12	31786185	31797298
H3-5_chr12_31786185_31797298	0/0	c0003	408	10	10	0	0	0	0	copy fasta	H3-5	chr12	31786185	31797298
H3-5_chr12_31786185_31797298	0/0	c0004	408	6	6	0	0	0	0	copy fasta	H3-5	chr12	31786185	31797298
H3-5_chr12_31786185_31797298	0/0	c0005	408	4	4	0	0	0	0	copy fasta	H3-5	chr12	31786185	31797298
H3-5_chr12_31786185_31797298	0/0	c0006	408	3	0	0	0	0	3	copy fasta	H3-5	chr12	31786185	31797298
H3-5_chr12_31786185_31797298	0/0	c0007	408	2	2	0	0	0	0	copy fasta	H3-5	chr12	31786185	31797298
H3-7_chr1_143900510_143910977	0/0	c0001	411	284	66	58	120	14	26	copy fasta	H3-7	chr1	143900510	143910977
H3-7_chr1_143900510_143910977	0/0	c0002	411	5	5	0	0	0	0	copy fasta	H3-7	chr1	143900510	143910977
H3-7_chr1_143900510_143910977	0/0	c0003	411	4	4	0	0	0	0	copy fasta	H3-7	chr1	143900510	143910977
H3-7_chr1_143900510_143910977	0/0	c0004	411	3	3	0	0	0	0	copy fasta	H3-7	chr1	143900510	143910977
H3-7_chr1_143900510_143910977	0/0	c0005	411	2	1	0	1	0	0	copy fasta	H3-7	chr1	143900510	143910977
H3-7_chr1_143900510_143910977	0/0	c0006	411	1	1	0	0	0	0	copy fasta	H3-7	chr1	143900510	143910977
H3-7_chr1_143900510_143910977	0/0	c0007	411	1	0	0	1	0	0	copy fasta	H3-7	chr1	143900510	143910977
H3C10_chr6_27805051_27815536	1/1	c0001	411	372	81	64	176	10	39	copy fasta	H3C10	chr6	27805051	27815536
H3C10_chr6_27805051_27815536	0/0	c0002	411	19	8	2	8	0	1	copy fasta	H3C10	chr6	27805051	27815536
H3C10_chr6_27805051_27815536	0/0	c0003	411	1	1	0	0	0	0	copy fasta	H3C10	chr6	27805051	27815536
H3C11_chr6_27866845_27877346	1/1	c0001	411	261	41	53	133	6	26	copy fasta	H3C11	chr6	27866845	27877346
H3C11_chr6_27866845_27877346	0/0	c0002	411	102	41	22	29	2	8	copy fasta	H3C11	chr6	27866845	27877346
H3C11_chr6_27866845_27877346	0/0	c0003	411	5	4	1	0	0	0	copy fasta	H3C11	chr6	27866845	27877346
H3C11_chr6_27866845_27877346	0/0	c0004	411	3	1	0	0	0	2	copy fasta	H3C11	chr6	27866845	27877346
H3C11_chr6_27866845_27877346	0/0	c0005	411	2	0	0	0	0	2	copy fasta	H3C11	chr6	27866845	27877346
H3C11_chr6_27866845_27877346	0/0	c0006	411	1	1	0	0	0	0	copy fasta	H3C11	chr6	27866845	27877346
H3C12_chr6_27885315_27895826	1/1	c0001	411	341	81	53	154	13	38	copy fasta	H3C12	chr6	27885315	27895826
H3C12_chr6_27885315_27895826	0/0	c0002	411	61	19	17	18	1	6	copy fasta	H3C12	chr6	27885315	27895826
H3C13_chr1_149808225_149818693	0/0	c0000	0	1	0	0	1	0	0	copy fasta	H3C13	chr1	149808225	149818693
H3C13_chr1_149808225_149818693	0/0	c0001	411	369	94	74	145	16	40	copy fasta	H3C13	chr1	149808225	149818693
H3C13_chr1_149808225_149818693	0/0	c0002	411	4	4	0	0	0	0	copy fasta	H3C13	chr1	149808225	149818693
H3C14_chr1_149835687_149846208	0/0	c0001	411	299	79	60	106	14	40	copy fasta	H3C14	chr1	149835687	149846208
H3C14_chr1_149835687_149846208	0/0	c0002	411	2	1	1	0	0	0	copy fasta	H3C14	chr1	149835687	149846208
H3C14_chr1_149835687_149846208	0/0	c0003	411	1	0	1	0	0	0	copy fasta	H3C14	chr1	149835687	149846208
H3C15_chr1_149847608_149858125	0/0	c0001	411	328	81	66	123	14	44	copy fasta	H3C15	chr1	149847608	149858125
H3C15_chr1_149847608_149858125	0/0	c0002	411	3	3	0	0	0	0	copy fasta	H3C15	chr1	149847608	149858125
H3C15_chr1_149847608_149858125	0/0	c0003	411	1	0	0	1	0	0	copy fasta	H3C15	chr1	149847608	149858125
H3C1_chr6_26015451_26025958	1/1	c0001	411	344	78	61	141	17	45	copy fasta	H3C1	chr6	26015451	26025958
H3C1_chr6_26015451_26025958	0/0	c0002	411	13	1	0	12	0	0	copy fasta	H3C1	chr6	26015451	26025958
H3C1_chr6_26015451_26025958	0/0	c0003	411	11	8	3	0	0	0	copy fasta	H3C1	chr6	26015451	26025958
H3C1_chr6_26015451_26025958	0/0	c0004	411	11	0	0	11	0	0	copy fasta	H3C1	chr6	26015451	26025958