JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
H3C1_chr6_26015451_26025958	0/0	c0005	411	9	9	0	0	0	0	copy fasta	H3C1	chr6	26015451	26025958
H3C1_chr6_26015451_26025958	0/0	c0006	411	4	0	2	0	1	1	copy fasta	H3C1	chr6	26015451	26025958
H3C1_chr6_26015451_26025958	0/0	c0007	411	2	0	0	2	0	0	copy fasta	H3C1	chr6	26015451	26025958
H3C1_chr6_26015451_26025958	0/0	c0008	411	2	0	0	2	0	0	copy fasta	H3C1	chr6	26015451	26025958
H3C2_chr6_26026589_26037099	1/1	c0001	411	382	85	76	153	18	48	copy fasta	H3C2	chr6	26026589	26037099
H3C2_chr6_26026589_26037099	0/0	c0002	411	11	10	1	0	0	0	copy fasta	H3C2	chr6	26026589	26037099
H3C2_chr6_26026589_26037099	0/0	c0003	411	1	0	0	1	0	0	copy fasta	H3C2	chr6	26026589	26037099
H3C2_chr6_26026589_26037099	0/0	c0004	411	1	1	0	0	0	0	copy fasta	H3C2	chr6	26026589	26037099
H3C2_chr6_26026589_26037099	0/0	c0005	411	1	0	1	0	0	0	copy fasta	H3C2	chr6	26026589	26037099
H3C3_chr6_26040384_26050869	0/0	c0001	411	172	61	23	54	12	22	copy fasta	H3C3	chr6	26040384	26050869
H3C3_chr6_26040384_26050869	0/0	c0002	411	135	3	22	103	0	7	copy fasta	H3C3	chr6	26040384	26050869
H3C3_chr6_26040384_26050869	1/0	c0003	411	91	20	18	34	3	15	copy fasta	H3C3	chr6	26040384	26050869
H3C3_chr6_26040384_26050869	0/0	c0004	411	17	8	5	2	1	1	copy fasta	H3C3	chr6	26040384	26050869
H3C3_chr6_26040384_26050869	0/0	c0005	411	4	2	2	0	0	0	copy fasta	H3C3	chr6	26040384	26050869
H3C3_chr6_26040384_26050869	0/0	c0006	411	1	0	0	1	0	0	copy fasta	H3C3	chr6	26040384	26050869
H3C3_chr6_26040384_26050869	0/0	c0007	411	1	0	0	0	0	1	copy fasta	H3C3	chr6	26040384	26050869
H3C4_chr6_26191784_26202286	1/1	c0001	411	393	93	70	168	18	42	copy fasta	H3C4	chr6	26191784	26202286
H3C4_chr6_26191784_26202286	0/0	c0002	411	1	1	0	0	0	0	copy fasta	H3C4	chr6	26191784	26202286
H3C4_chr6_26191784_26202286	0/0	c0003	411	1	1	0	0	0	0	copy fasta	H3C4	chr6	26191784	26202286
H3C4_chr6_26191784_26202286	0/0	c0004	411	1	1	0	0	0	0	copy fasta	H3C4	chr6	26191784	26202286
H3C6_chr6_26220135_26230616	1/1	c0001	411	351	97	68	128	14	42	copy fasta	H3C6	chr6	26220135	26230616
H3C6_chr6_26220135_26230616	0/0	c0002	411	1	1	0	0	0	0	copy fasta	H3C6	chr6	26220135	26230616
H3C6_chr6_26220135_26230616	0/0	c0003	411	1	0	0	1	0	0	copy fasta	H3C6	chr6	26220135	26230616
H3C6_chr6_26220135_26230616	0/0	c0004	411	1	0	0	1	0	0	copy fasta	H3C6	chr6	26220135	26230616
H3C7_chr6_26245142_26255635	0/0	c0001	411	371	98	71	146	14	42	copy fasta	H3C7	chr6	26245142	26255635
H3C7_chr6_26245142_26255635	0/0	c0002	411	1	0	1	0	0	0	copy fasta	H3C7	chr6	26245142	26255635
H3C8_chr6_26265918_26276413	1/1	c0001	411	379	88	72	165	8	44	copy fasta	H3C8	chr6	26265918	26276413
H3C8_chr6_26265918_26276413	0/0	c0002	411	10	0	8	0	0	2	copy fasta	H3C8	chr6	26265918	26276413
H3C8_chr6_26265918_26276413	0/0	c0003	411	4	0	0	4	0	0	copy fasta	H3C8	chr6	26265918	26276413
H3C8_chr6_26265918_26276413	0/0	c0004	411	2	2	0	0	0	0	copy fasta	H3C8	chr6	26265918	26276413
H3C8_chr6_26265918_26276413	0/0	c0005	411	1	0	0	1	0	0	copy fasta	H3C8	chr6	26265918	26276413
H3C8_chr6_26265918_26276413	0/0	c0006	411	1	0	0	1	0	0	copy fasta	H3C8	chr6	26265918	26276413
H3C8_chr6_26265918_26276413	0/0	c0007	411	1	0	0	1	0	0	copy fasta	H3C8	chr6	26265918	26276413
H3Y1_chr5_17649868_17660849	0/1	c0001	411	323	65	66	143	12	36	copy fasta	H3Y1	chr5	17649868	17660849
H3Y1_chr5_17649868_17660849	1/0	c0002	411	38	22	5	7	0	3	copy fasta	H3Y1	chr5	17649868	17660849
H3Y1_chr5_17649868_17660849	0/0	c0003	411	7	7	0	0	0	0	copy fasta	H3Y1	chr5	17649868	17660849
H3Y1_chr5_17649868_17660849	0/0	c0004	411	2	2	0	0	0	0	copy fasta	H3Y1	chr5	17649868	17660849
H3Y1_chr5_17649868_17660849	0/0	c0005	411	1	0	1	0	0	0	copy fasta	H3Y1	chr5	17649868	17660849
H3Y1_chr5_17649868_17660849	0/0	c0006	411	1	0	0	1	0	0	copy fasta	H3Y1	chr5	17649868	17660849
H3Y1_chr5_17649868_17660849	0/0	c0007	411	1	0	1	0	0	0	copy fasta	H3Y1	chr5	17649868	17660849
H3Y1_chr5_17649868_17660849	0/0	c0008	411	1	0	0	1	0	0	copy fasta	H3Y1	chr5	17649868	17660849
H3Y1_chr5_17649868_17660849	0/0	c0009	411	1	0	0	0	0	1	copy fasta	H3Y1	chr5	17649868	17660849
H3Y1_chr5_17649868_17660849	0/0	c0010	411	1	0	1	0	0	0	copy fasta	H3Y1	chr5	17649868	17660849
H3Y2_chr5_17485967_17497076	0/1	c0001	444	200	49	41	76	10	23	copy fasta	H3Y2	chr5	17485967	17497076
H3Y2_chr5_17485967_17497076	1/0	c0002	444	183	25	27	107	3	20	copy fasta	H3Y2	chr5	17485967	17497076
H3Y2_chr5_17485967_17497076	0/0	c0003	444	7	0	6	0	0	1	copy fasta	H3Y2	chr5	17485967	17497076
H3Y2_chr5_17485967_17497076	0/0	c0004	444	4	4	0	0	0	0	copy fasta	H3Y2	chr5	17485967	17497076
H3Y2_chr5_17485967_17497076	0/0	c0005	444	2	0	0	0	0	2	copy fasta	H3Y2	chr5	17485967	17497076
H3Y2_chr5_17485967_17497076	0/0	c0006	444	1	0	0	1	0	0	copy fasta	H3Y2	chr5	17485967	17497076
H3Y2_chr5_17485967_17497076	0/0	c0007	444	1	0	0	1	0	0	copy fasta	H3Y2	chr5	17485967	17497076