Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AKAP1_chr17_57080246_57126344	0/0	c0013	2712	2	0	0	2	0	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	c0014	2712	2	0	0	2	0	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	c0015	2712	1	0	0	1	0	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	c0016	2712	1	0	0	1	0	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	c0017	2712	1	1	0	0	0	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	c0018	2712	1	0	1	0	0	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	c0019	2712	1	0	0	0	0	1	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	c0020	2712	1	0	1	0	0	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	c0021	2712	1	1	0	0	0	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	c0022	2712	1	1	0	0	0	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	c0023	2712	1	1	0	0	0	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	c0024	2712	1	1	0	0	0	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	c0025	2712	1	1	0	0	0	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	c0026	2712	1	0	0	0	0	1	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	c0027	2712	1	0	0	1	0	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	c0028	2712	1	1	0	0	0	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP3_chr12_4610518_4654051	0/0	c0001	2562	84	3	33	30	9	9	copy fasta	AKAP3	chr12	4610518	4654051
AKAP3_chr12_4610518_4654051	0/0	c0002	2562	76	11	19	33	6	7	copy fasta	AKAP3	chr12	4610518	4654051
AKAP3_chr12_4610518_4654051	0/0	c0003	2562	69	13	3	47	1	5	copy fasta	AKAP3	chr12	4610518	4654051
AKAP3_chr12_4610518_4654051	0/0	c0004	2562	42	1	7	26	1	7	copy fasta	AKAP3	chr12	4610518	4654051
AKAP3_chr12_4610518_4654051	0/0	c0005	2562	40	4	2	28	0	6	copy fasta	AKAP3	chr12	4610518	4654051
AKAP3_chr12_4610518_4654051	0/0	c0006	2562	38	35	3	0	0	0	copy fasta	AKAP3	chr12	4610518	4654051
AKAP3_chr12_4610518_4654051	0/0	c0007	2562	20	0	1	19	0	0	copy fasta	AKAP3	chr12	4610518	4654051
AKAP3_chr12_4610518_4654051	1/0	c0008	2562	13	12	0	0	0	0	copy fasta	AKAP3	chr12	4610518	4654051
AKAP3_chr12_4610518_4654051	0/0	c0009	2562	6	0	0	6	0	0	copy fasta	AKAP3	chr12	4610518	4654051
AKAP3_chr12_4610518_4654051	0/0	c0010	2592	4	4	0	0	0	0	copy fasta	AKAP3	chr12	4610518	4654051
AKAP3_chr12_4610518_4654051	0/0	c0011	2562	3	3	0	0	0	0	copy fasta	AKAP3	chr12	4610518	4654051
AKAP3_chr12_4610518_4654051	0/0	c0012	2562	3	3	0	0	0	0	copy fasta	AKAP3	chr12	4610518	4654051
AKAP3_chr12_4610518_4654051	0/0	c0013	2562	2	2	0	0	0	0	copy fasta	AKAP3	chr12	4610518	4654051
AKAP3_chr12_4610518_4654051	0/0	c0014	2562	2	2	0	0	0	0	copy fasta	AKAP3	chr12	4610518	4654051
AKAP3_chr12_4610518_4654051	0/0	c0015	2562	2	1	0	0	1	0	copy fasta	AKAP3	chr12	4610518	4654051
AKAP3_chr12_4610518_4654051	0/0	c0016	2562	2	2	0	0	0	0	copy fasta	AKAP3	chr12	4610518	4654051
AKAP3_chr12_4610518_4654051	0/0	c0017	2562	1	0	0	1	0	0	copy fasta	AKAP3	chr12	4610518	4654051
AKAP3_chr12_4610518_4654051	0/1	c0018	2562	1	0	0	0	0	0	copy fasta	AKAP3	chr12	4610518	4654051
AKAP3_chr12_4610518_4654051	0/0	c0019	2562	1	0	0	1	0	0	copy fasta	AKAP3	chr12	4610518	4654051
AKAP3_chr12_4610518_4654051	0/0	c0020	2562	1	0	0	0	0	1	copy fasta	AKAP3	chr12	4610518	4654051
AKAP3_chr12_4610518_4654051	0/0	c0021	2562	1	0	0	1	0	0	copy fasta	AKAP3	chr12	4610518	4654051
AKAP3_chr12_4610518_4654051	0/0	c0022	2562	1	0	1	0	0	0	copy fasta	AKAP3	chr12	4610518	4654051
AKAP3_chr12_4610518_4654051	0/0	c0023	2562	1	1	0	0	0	0	copy fasta	AKAP3	chr12	4610518	4654051
AKAP3_chr12_4610518_4654051	0/0	c0024	2562	1	0	0	0	0	1	copy fasta	AKAP3	chr12	4610518	4654051
AKAP3_chr12_4610518_4654051	0/0	c0025	2562	1	1	0	0	0	0	copy fasta	AKAP3	chr12	4610518	4654051
AKAP3_chr12_4610518_4654051	0/0	c0026	2562	1	1	0	0	0	0	copy fasta	AKAP3	chr12	4610518	4654051
AKAP3_chr12_4610518_4654051	0/0	c0027	2562	1	1	0	0	0	0	copy fasta	AKAP3	chr12	4610518	4654051
AKAP3_chr12_4610518_4654051	0/0	c0028	2562	1	0	1	0	0	0	copy fasta	AKAP3	chr12	4610518	4654051
AKAP4_chrX_50185777_50206007	1/1	c0001	2565	247	52	40	123	6	24	copy fasta	AKAP4	chrX	50185777	50206007
AKAP4_chrX_50185777_50206007	0/0	c0002	2565	10	10	0	0	0	0	copy fasta	AKAP4	chrX	50185777	50206007
AKAP4_chrX_50185777_50206007	0/0	c0003	2565	9	9	0	0	0	0	copy fasta	AKAP4	chrX	50185777	50206007
AKAP4_chrX_50185777_50206007	0/0	c0004	2565	6	6	0	0	0	0	copy fasta	AKAP4	chrX	50185777	50206007
AKAP4_chrX_50185777_50206007	0/0	c0005	2565	6	0	0	6	0	0	copy fasta	AKAP4	chrX	50185777	50206007
AKAP4_chrX_50185777_50206007	0/0	c0006	2565	3	0	0	3	0	0	copy fasta	AKAP4	chrX	50185777	50206007