JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
H3Y2_chr5_17485967_17497076	0/0	c0008	444	1	0	0	0	1	0	copy fasta	H3Y2	chr5	17485967	17497076
H3Y2_chr5_17485967_17497076	0/0	c0009	418	1	0	0	1	0	0	copy fasta	H3Y2	chr5	17485967	17497076
H4C11_chr6_27819092_27829480	0/0	c0000	0	1	0	1	0	0	0	copy fasta	H4C11	chr6	27819092	27829480
H4C11_chr6_27819092_27829480	0/0	c0001	312	359	89	71	152	16	31	copy fasta	H4C11	chr6	27819092	27829480
H4C11_chr6_27819092_27829480	0/0	c0002	312	29	1	8	17	0	3	copy fasta	H4C11	chr6	27819092	27829480
H4C11_chr6_27819092_27829480	0/0	c0003	312	3	1	0	0	0	2	copy fasta	H4C11	chr6	27819092	27829480
H4C11_chr6_27819092_27829480	0/0	c0004	312	2	0	2	0	0	0	copy fasta	H4C11	chr6	27819092	27829480
H4C11_chr6_27819092_27829480	0/0	c0005	312	1	0	0	1	0	0	copy fasta	H4C11	chr6	27819092	27829480
H4C11_chr6_27819092_27829480	0/0	c0006	312	1	1	0	0	0	0	copy fasta	H4C11	chr6	27819092	27829480
H4C12_chr6_27826174_27836560	0/1	c0001	312	366	82	77	158	15	33	copy fasta	H4C12	chr6	27826174	27836560
H4C12_chr6_27826174_27836560	0/0	c0002	312	44	16	9	16	0	3	copy fasta	H4C12	chr6	27826174	27836560
H4C12_chr6_27826174_27836560	0/0	c0003	312	5	0	0	2	1	2	copy fasta	H4C12	chr6	27826174	27836560
H4C12_chr6_27826174_27836560	0/0	c0004	312	1	0	0	1	0	0	copy fasta	H4C12	chr6	27826174	27836560
H4C12_chr6_27826174_27836560	0/0	c0005	312	1	0	0	0	0	1	copy fasta	H4C12	chr6	27826174	27836560
H4C12_chr6_27826174_27836560	0/0	c0006	312	1	0	0	1	0	0	copy fasta	H4C12	chr6	27826174	27836560
H4C12_chr6_27826174_27836560	0/0	c0007	312	1	0	0	0	0	1	copy fasta	H4C12	chr6	27826174	27836560
H4C13_chr6_27868148_27878534	1/1	c0001	312	382	88	76	168	8	40	copy fasta	H4C13	chr6	27868148	27878534
H4C13_chr6_27868148_27878534	0/0	c0002	312	2	0	0	0	0	2	copy fasta	H4C13	chr6	27868148	27878534
H4C14_chr1_149827657_149838052	0/0	c0001	312	234	74	56	62	6	36	copy fasta	H4C14	chr1	149827657	149838052
H4C14_chr1_149827657_149838052	0/0	c0002	312	2	2	0	0	0	0	copy fasta	H4C14	chr1	149827657	149838052
H4C15_chr1_149855764_149866159	0/0	c0001	312	204	53	37	84	8	22	copy fasta	H4C15	chr1	149855764	149866159
H4C15_chr1_149855764_149866159	0/0	c0002	312	2	1	1	0	0	0	copy fasta	H4C15	chr1	149855764	149866159
H4C16_chr12_14765720_14776131	1/1	c0001	312	425	83	78	200	16	46	copy fasta	H4C16	chr12	14765720	14776131
H4C16_chr12_14765720_14776131	0/0	c0002	312	6	6	0	0	0	0	copy fasta	H4C16	chr12	14765720	14776131
H4C16_chr12_14765720_14776131	0/0	c0003	312	4	0	0	4	0	0	copy fasta	H4C16	chr12	14765720	14776131
H4C16_chr12_14765720_14776131	0/0	c0004	312	2	0	0	2	0	0	copy fasta	H4C16	chr12	14765720	14776131
H4C16_chr12_14765720_14776131	0/0	c0005	312	1	1	0	0	0	0	copy fasta	H4C16	chr12	14765720	14776131
H4C1_chr6_26016649_26027050	1/1	c0001	312	383	96	64	157	18	46	copy fasta	H4C1	chr6	26016649	26027050
H4C1_chr6_26016649_26027050	0/0	c0002	312	14	0	0	14	0	0	copy fasta	H4C1	chr6	26016649	26027050
H4C1_chr6_26016649_26027050	0/0	c0003	312	1	0	0	1	0	0	copy fasta	H4C1	chr6	26016649	26027050
H4C2_chr6_26021896_26032283	1/0	c0001	312	199	73	33	56	8	28	copy fasta	H4C2	chr6	26021896	26032283
H4C2_chr6_26021896_26032283	0/1	c0002	312	173	13	35	97	10	17	copy fasta	H4C2	chr6	26021896	26032283
H4C2_chr6_26021896_26032283	0/0	c0003	312	11	8	3	0	0	0	copy fasta	H4C2	chr6	26021896	26032283
H4C2_chr6_26021896_26032283	0/0	c0004	312	5	0	0	5	0	0	copy fasta	H4C2	chr6	26021896	26032283
H4C2_chr6_26021896_26032283	0/0	c0005	312	3	1	0	0	0	2	copy fasta	H4C2	chr6	26021896	26032283
H4C2_chr6_26021896_26032283	0/0	c0006	312	2	0	2	0	0	0	copy fasta	H4C2	chr6	26021896	26032283
H4C2_chr6_26021896_26032283	0/0	c0007	312	2	0	0	2	0	0	copy fasta	H4C2	chr6	26021896	26032283
H4C2_chr6_26021896_26032283	0/0	c0008	312	1	1	0	0	0	0	copy fasta	H4C2	chr6	26021896	26032283
H4C2_chr6_26021896_26032283	0/0	c0009	312	1	0	1	0	0	0	copy fasta	H4C2	chr6	26021896	26032283
H4C2_chr6_26021896_26032283	0/0	c0010	312	1	0	0	1	0	0	copy fasta	H4C2	chr6	26021896	26032283
H4C2_chr6_26021896_26032283	0/0	c0011	312	1	0	0	0	0	1	copy fasta	H4C2	chr6	26021896	26032283
H4C2_chr6_26021896_26032283	0/0	c0012	312	1	0	0	1	0	0	copy fasta	H4C2	chr6	26021896	26032283
H4C3_chr6_26098933_26109337	1/1	c0001	312	259	53	47	124	7	26	copy fasta	H4C3	chr6	26098933	26109337
H4C3_chr6_26098933_26109337	0/0	c0002	312	70	12	20	22	3	13	copy fasta	H4C3	chr6	26098933	26109337
H4C3_chr6_26098933_26109337	0/0	c0003	312	56	23	7	22	2	2	copy fasta	H4C3	chr6	26098933	26109337
H4C3_chr6_26098933_26109337	0/0	c0004	312	10	10	0	0	0	0	copy fasta	H4C3	chr6	26098933	26109337
H4C3_chr6_26098933_26109337	0/0	c0005	312	4	0	1	0	2	1	copy fasta	H4C3	chr6	26098933	26109337
H4C3_chr6_26098933_26109337	0/0	c0006	312	3	0	0	3	0	0	copy fasta	H4C3	chr6	26098933	26109337
H4C3_chr6_26098933_26109337	0/0	c0007	312	2	0	2	0	0	0	copy fasta	H4C3	chr6	26098933	26109337
H4C3_chr6_26098933_26109337	0/0	c0008	312	1	0	1	0	0	0	copy fasta	H4C3	chr6	26098933	26109337