JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
H4C3_chr6_26098933_26109337	0/0	c0009	312	1	0	0	1	0	0	copy fasta	H4C3	chr6	26098933	26109337
H4C3_chr6_26098933_26109337	0/0	c0010	312	1	1	0	0	0	0	copy fasta	H4C3	chr6	26098933	26109337
H4C3_chr6_26098933_26109337	0/0	c0011	312	1	1	0	0	0	0	copy fasta	H4C3	chr6	26098933	26109337
H4C4_chr6_26183710_26194112	1/1	c0001	312	357	95	58	150	14	38	copy fasta	H4C4	chr6	26183710	26194112
H4C4_chr6_26183710_26194112	0/0	c0002	312	4	0	0	4	0	0	copy fasta	H4C4	chr6	26183710	26194112
H4C4_chr6_26183710_26194112	0/0	c0003	312	2	0	2	0	0	0	copy fasta	H4C4	chr6	26183710	26194112
H4C4_chr6_26183710_26194112	0/0	c0004	312	2	0	0	2	0	0	copy fasta	H4C4	chr6	26183710	26194112
H4C4_chr6_26183710_26194112	0/0	c0005	312	1	0	0	0	0	1	copy fasta	H4C4	chr6	26183710	26194112
H4C4_chr6_26183710_26194112	0/0	c0006	312	1	0	0	0	0	1	copy fasta	H4C4	chr6	26183710	26194112
H4C4_chr6_26183710_26194112	0/0	c0007	312	1	1	0	0	0	0	copy fasta	H4C4	chr6	26183710	26194112
H4C4_chr6_26183710_26194112	0/0	c0008	312	1	0	0	1	0	0	copy fasta	H4C4	chr6	26183710	26194112
H4C4_chr6_26183710_26194112	0/0	c0009	312	1	0	0	1	0	0	copy fasta	H4C4	chr6	26183710	26194112
H4C4_chr6_26183710_26194112	0/0	c0010	312	1	0	0	1	0	0	copy fasta	H4C4	chr6	26183710	26194112
H4C4_chr6_26183710_26194112	0/0	c0011	312	1	0	0	1	0	0	copy fasta	H4C4	chr6	26183710	26194112
H4C5_chr6_26199610_26210021	1/0	c0001	312	382	88	66	174	17	36	copy fasta	H4C5	chr6	26199610	26210021
H4C5_chr6_26199610_26210021	0/1	c0002	312	22	6	5	4	1	5	copy fasta	H4C5	chr6	26199610	26210021
H4C5_chr6_26199610_26210021	0/0	c0003	312	2	0	1	0	0	1	copy fasta	H4C5	chr6	26199610	26210021
H4C5_chr6_26199610_26210021	0/0	c0004	312	1	0	0	1	0	0	copy fasta	H4C5	chr6	26199610	26210021
H4C5_chr6_26199610_26210021	0/0	c0005	312	1	0	0	1	0	0	copy fasta	H4C5	chr6	26199610	26210021
H4C6_chr6_26235393_26245793	1/0	c0001	312	321	88	61	119	13	39	copy fasta	H4C6	chr6	26235393	26245793
H4C6_chr6_26235393_26245793	0/1	c0002	312	22	6	5	4	1	5	copy fasta	H4C6	chr6	26235393	26245793
H4C6_chr6_26235393_26245793	0/0	c0003	312	12	0	0	12	0	0	copy fasta	H4C6	chr6	26235393	26245793
H4C6_chr6_26235393_26245793	0/0	c0004	312	2	2	0	0	0	0	copy fasta	H4C6	chr6	26235393	26245793
H4C6_chr6_26235393_26245793	0/0	c0005	312	1	0	0	1	0	0	copy fasta	H4C6	chr6	26235393	26245793
H4C6_chr6_26235393_26245793	0/0	c0006	312	1	1	0	0	0	0	copy fasta	H4C6	chr6	26235393	26245793
H4C6_chr6_26235393_26245793	0/0	c0007	312	1	1	0	0	0	0	copy fasta	H4C6	chr6	26235393	26245793
H4C7_chr6_26241611_26251996	1/1	c0001	297	328	91	58	136	5	36	copy fasta	H4C7	chr6	26241611	26251996
H4C7_chr6_26241611_26251996	0/0	c0002	297	36	5	9	7	9	6	copy fasta	H4C7	chr6	26241611	26251996
H4C7_chr6_26241611_26251996	0/0	c0003	297	1	0	0	1	0	0	copy fasta	H4C7	chr6	26241611	26251996
H4C7_chr6_26241611_26251996	0/0	c0004	297	1	0	1	0	0	0	copy fasta	H4C7	chr6	26241611	26251996
H4C8_chr6_26280126_26290534	0/1	c0001	312	229	25	38	138	2	25	copy fasta	H4C8	chr6	26280126	26290534
H4C8_chr6_26280126_26290534	1/0	c0002	312	64	6	27	11	4	15	copy fasta	H4C8	chr6	26280126	26290534
H4C8_chr6_26280126_26290534	0/0	c0003	312	55	11	8	20	10	6	copy fasta	H4C8	chr6	26280126	26290534
H4C8_chr6_26280126_26290534	0/0	c0004	312	53	47	6	0	0	0	copy fasta	H4C8	chr6	26280126	26290534
H4C8_chr6_26280126_26290534	0/0	c0005	312	2	0	0	2	0	0	copy fasta	H4C8	chr6	26280126	26290534
H4C8_chr6_26280126_26290534	0/0	c0006	312	1	0	1	0	0	0	copy fasta	H4C8	chr6	26280126	26290534
H4C8_chr6_26280126_26290534	0/0	c0007	312	1	0	0	1	0	0	copy fasta	H4C8	chr6	26280126	26290534
H4C8_chr6_26280126_26290534	0/0	c0008	312	1	1	0	0	0	0	copy fasta	H4C8	chr6	26280126	26290534
H4C9_chr6_27134282_27144678	1/1	c0001	312	387	89	74	166	18	38	copy fasta	H4C9	chr6	27134282	27144678
H4C9_chr6_27134282_27144678	0/0	c0002	312	4	4	0	0	0	0	copy fasta	H4C9	chr6	27134282	27144678
H4C9_chr6_27134282_27144678	0/0	c0003	312	1	1	0	0	0	0	copy fasta	H4C9	chr6	27134282	27144678
H6PD_chr1_9229774_9276337	1/0	c0001	2376	110	14	25	52	5	13	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0002	2376	52	1	10	36	1	4	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0003	2376	47	8	8	23	2	6	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0004	2376	39	14	10	0	2	13	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0005	2376	36	7	3	21	1	4	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0006	2376	20	14	3	2	0	1	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0007	2376	12	0	0	10	1	1	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0008	2376	10	0	5	0	3	2	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0009	2376	5	5	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337