JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
H6PD_chr1_9229774_9276337	0/0	c0010	2376	4	1	2	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0011	2376	4	4	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0012	2376	3	1	1	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0013	2376	3	2	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0014	2376	3	1	0	2	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0015	2376	3	0	2	0	1	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0016	2376	3	3	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0017	2376	2	0	0	2	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0018	2376	2	2	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0019	2376	2	2	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0020	2376	2	0	0	2	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0021	2376	2	1	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0022	2376	2	0	1	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0023	2376	2	2	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0024	2376	2	2	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0025	2376	2	2	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/1	c0026	2376	2	0	1	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0027	2376	1	0	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0028	2376	1	0	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0029	2376	1	0	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0030	2376	1	0	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0031	2376	1	1	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0032	2376	1	0	1	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0033	2376	1	0	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0034	2376	1	0	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0035	2376	1	1	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0036	2376	1	1	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0037	2376	1	1	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0038	2376	1	1	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0039	2376	1	0	1	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0040	2376	1	1	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0041	2376	1	0	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0042	2376	1	0	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0043	2376	1	0	1	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0044	2376	1	0	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0045	2376	1	1	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0046	2376	1	0	1	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0047	2376	1	0	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0048	2376	1	1	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0049	2376	1	0	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0050	2376	1	0	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0051	2376	1	0	1	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0052	2376	1	1	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0053	2376	1	1	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0054	2376	1	0	0	0	1	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0055	2376	1	0	0	0	1	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	c0056	2376	1	0	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
HAAO_chr2_42762089_42797583	0/1	c0001	861	178	52	43	39	9	34	copy fasta	HAAO	chr2	42762089	42797583
HAAO_chr2_42762089_42797583	0/0	c0002	861	154	23	27	90	3	11	copy fasta	HAAO	chr2	42762089	42797583
HAAO_chr2_42762089_42797583	1/0	c0003	861	67	14	7	36	4	5	copy fasta	HAAO	chr2	42762089	42797583