JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HAAO_chr2_42762089_42797583	0/0	c0004	861	3	1	2	0	0	0	copy fasta	HAAO	chr2	42762089	42797583
HAAO_chr2_42762089_42797583	0/0	c0005	861	2	0	2	0	0	0	copy fasta	HAAO	chr2	42762089	42797583
HAAO_chr2_42762089_42797583	0/0	c0006	861	2	2	0	0	0	0	copy fasta	HAAO	chr2	42762089	42797583
HAAO_chr2_42762089_42797583	0/0	c0007	861	1	0	0	1	0	0	copy fasta	HAAO	chr2	42762089	42797583
HAAO_chr2_42762089_42797583	0/0	c0008	861	1	0	1	0	0	0	copy fasta	HAAO	chr2	42762089	42797583
HAAO_chr2_42762089_42797583	0/0	c0009	861	1	0	0	1	0	0	copy fasta	HAAO	chr2	42762089	42797583
HAAO_chr2_42762089_42797583	0/0	c0010	861	1	0	0	1	0	0	copy fasta	HAAO	chr2	42762089	42797583
HABP2_chr10_113548053_113594602	0/0	c0001	1683	150	23	20	76	6	25	copy fasta	HABP2	chr10	113548053	113594602
HABP2_chr10_113548053_113594602	1/1	c0002	1683	102	29	13	49	2	7	copy fasta	HABP2	chr10	113548053	113594602
HABP2_chr10_113548053_113594602	0/0	c0003	1683	85	29	16	32	3	5	copy fasta	HABP2	chr10	113548053	113594602
HABP2_chr10_113548053_113594602	0/0	c0004	1683	81	8	21	39	6	7	copy fasta	HABP2	chr10	113548053	113594602
HABP2_chr10_113548053_113594602	0/0	c0005	1683	4	0	3	0	0	1	copy fasta	HABP2	chr10	113548053	113594602
HABP2_chr10_113548053_113594602	0/0	c0006	1683	3	3	0	0	0	0	copy fasta	HABP2	chr10	113548053	113594602
HABP2_chr10_113548053_113594602	0/0	c0007	1683	3	0	0	3	0	0	copy fasta	HABP2	chr10	113548053	113594602
HABP2_chr10_113548053_113594602	0/0	c0008	1683	2	2	0	0	0	0	copy fasta	HABP2	chr10	113548053	113594602
HABP2_chr10_113548053_113594602	0/0	c0009	1683	2	0	1	0	1	0	copy fasta	HABP2	chr10	113548053	113594602
HABP2_chr10_113548053_113594602	0/0	c0010	1683	1	0	1	0	0	0	copy fasta	HABP2	chr10	113548053	113594602
HABP2_chr10_113548053_113594602	0/0	c0011	1683	1	1	0	0	0	0	copy fasta	HABP2	chr10	113548053	113594602
HABP2_chr10_113548053_113594602	0/0	c0012	1683	1	0	0	1	0	0	copy fasta	HABP2	chr10	113548053	113594602
HABP2_chr10_113548053_113594602	0/0	c0013	1683	1	1	0	0	0	0	copy fasta	HABP2	chr10	113548053	113594602
HABP2_chr10_113548053_113594602	0/0	c0014	1683	1	1	0	0	0	0	copy fasta	HABP2	chr10	113548053	113594602
HABP2_chr10_113548053_113594602	0/0	c0015	1683	1	0	1	0	0	0	copy fasta	HABP2	chr10	113548053	113594602
HABP2_chr10_113548053_113594602	0/0	c0016	1683	1	1	0	0	0	0	copy fasta	HABP2	chr10	113548053	113594602
HABP2_chr10_113548053_113594602	0/0	c0017	1683	1	0	0	0	0	1	copy fasta	HABP2	chr10	113548053	113594602
HABP2_chr10_113548053_113594602	0/0	c0018	1683	1	1	0	0	0	0	copy fasta	HABP2	chr10	113548053	113594602
HABP2_chr10_113548053_113594602	0/0	c0019	1683	1	0	1	0	0	0	copy fasta	HABP2	chr10	113548053	113594602
HABP2_chr10_113548053_113594602	0/0	c0020	1683	1	1	0	0	0	0	copy fasta	HABP2	chr10	113548053	113594602
HABP2_chr10_113548053_113594602	0/0	c0021	1683	1	0	0	1	0	0	copy fasta	HABP2	chr10	113548053	113594602
HABP2_chr10_113548053_113594602	0/0	c0022	1683	1	0	0	1	0	0	copy fasta	HABP2	chr10	113548053	113594602
HABP2_chr10_113548053_113594602	0/0	c0023	1683	1	0	1	0	0	0	copy fasta	HABP2	chr10	113548053	113594602
HABP4_chr9_96445169_96496336	1/1	c0001	1242	239	42	47	101	15	32	copy fasta	HABP4	chr9	96445169	96496336
HABP4_chr9_96445169_96496336	0/0	c0002	1242	52	28	11	9	1	3	copy fasta	HABP4	chr9	96445169	96496336
HABP4_chr9_96445169_96496336	0/0	c0003	1242	11	11	0	0	0	0	copy fasta	HABP4	chr9	96445169	96496336
HABP4_chr9_96445169_96496336	0/0	c0004	1242	1	0	0	0	0	1	copy fasta	HABP4	chr9	96445169	96496336
HABP4_chr9_96445169_96496336	0/0	c0005	1242	1	1	0	0	0	0	copy fasta	HABP4	chr9	96445169	96496336
HABP4_chr9_96445169_96496336	0/0	c0006	1242	1	1	0	0	0	0	copy fasta	HABP4	chr9	96445169	96496336
HABP4_chr9_96445169_96496336	0/0	c0007	1242	1	1	0	0	0	0	copy fasta	HABP4	chr9	96445169	96496336
HACD1_chr10_17584032_17622374	0/1	c0001	867	254	53	55	111	9	25	copy fasta	HACD1	chr10	17584032	17622374
HACD1_chr10_17584032_17622374	0/0	c0002	867	61	1	6	46	4	4	copy fasta	HACD1	chr10	17584032	17622374
HACD1_chr10_17584032_17622374	0/0	c0003	867	53	25	14	4	4	6	copy fasta	HACD1	chr10	17584032	17622374
HACD1_chr10_17584032_17622374	0/0	c0004	867	26	6	0	19	1	0	copy fasta	HACD1	chr10	17584032	17622374
HACD1_chr10_17584032_17622374	0/0	c0005	867	4	4	0	0	0	0	copy fasta	HACD1	chr10	17584032	17622374
HACD1_chr10_17584032_17622374	0/0	c0006	867	3	3	0	0	0	0	copy fasta	HACD1	chr10	17584032	17622374
HACD1_chr10_17584032_17622374	0/0	c0007	867	2	1	1	0	0	0	copy fasta	HACD1	chr10	17584032	17622374
HACD1_chr10_17584032_17622374	0/0	c0008	867	1	0	0	0	0	1	copy fasta	HACD1	chr10	17584032	17622374
HACD1_chr10_17584032_17622374	0/0	c0009	867	1	0	0	1	0	0	copy fasta	HACD1	chr10	17584032	17622374
HACD1_chr10_17584032_17622374	1/0	c0010	867	1	0	0	0	0	0	copy fasta	HACD1	chr10	17584032	17622374
HACD1_chr10_17584032_17622374	0/0	c0011	867	1	1	0	0	0	0	copy fasta	HACD1	chr10	17584032	17622374
HACD1_chr10_17584032_17622374	0/0	c0012	867	1	1	0	0	0	0	copy fasta	HACD1	chr10	17584032	17622374
HACD1_chr10_17584032_17622374	0/0	c0013	867	1	1	0	0	0	0	copy fasta	HACD1	chr10	17584032	17622374