JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HACD1_chr10_17584032_17622374	0/0	c0014	867	1	0	0	1	0	0	copy fasta	HACD1	chr10	17584032	17622374
HACD2_chr3_123486554_123590053	1/1	c0001	765	152	43	32	47	7	21	copy fasta	HACD2	chr3	123486554	123590053
HACD2_chr3_123486554_123590053	0/0	c0002	765	102	17	14	65	1	5	copy fasta	HACD2	chr3	123486554	123590053
HACD2_chr3_123486554_123590053	0/0	c0003	765	94	27	14	39	4	10	copy fasta	HACD2	chr3	123486554	123590053
HACD2_chr3_123486554_123590053	0/0	c0004	765	1	1	0	0	0	0	copy fasta	HACD2	chr3	123486554	123590053
HACD2_chr3_123486554_123590053	0/0	c0005	765	1	0	0	1	0	0	copy fasta	HACD2	chr3	123486554	123590053
HACD3_chr15_65525463_65583349	1/1	c0001	1089	280	87	37	109	11	34	copy fasta	HACD3	chr15	65525463	65583349
HACD3_chr15_65525463_65583349	0/0	c0002	1089	23	0	10	8	1	4	copy fasta	HACD3	chr15	65525463	65583349
HACD3_chr15_65525463_65583349	0/0	c0003	1089	23	7	5	7	0	4	copy fasta	HACD3	chr15	65525463	65583349
HACD3_chr15_65525463_65583349	0/0	c0004	1089	1	0	1	0	0	0	copy fasta	HACD3	chr15	65525463	65583349
HACD3_chr15_65525463_65583349	0/0	c0005	1089	1	0	1	0	0	0	copy fasta	HACD3	chr15	65525463	65583349
HACD4_chr9_20994509_21036640	1/1	c0001	699	243	63	46	93	11	28	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	c0002	699	183	34	20	114	3	12	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	c0003	699	3	0	0	3	0	0	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	c0004	699	1	0	1	0	0	0	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	c0005	699	1	1	0	0	0	0	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	c0006	699	1	0	1	0	0	0	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	c0007	699	1	0	0	1	0	0	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	c0008	699	1	0	0	1	0	0	copy fasta	HACD4	chr9	20994509	21036640
HACE1_chr6_104723094_104864919	1/0	c0001	2730	281	45	48	150	8	29	copy fasta	HACE1	chr6	104723094	104864919
HACE1_chr6_104723094_104864919	0/1	c0002	2730	60	33	12	1	6	7	copy fasta	HACE1	chr6	104723094	104864919
HACE1_chr6_104723094_104864919	0/0	c0003	2730	2	2	0	0	0	0	copy fasta	HACE1	chr6	104723094	104864919
HACE1_chr6_104723094_104864919	0/0	c0004	2730	2	2	0	0	0	0	copy fasta	HACE1	chr6	104723094	104864919
HACE1_chr6_104723094_104864919	0/0	c0005	2730	1	0	0	1	0	0	copy fasta	HACE1	chr6	104723094	104864919
HACL1_chr3_15555699_15606569	1/1	c0001	1737	350	83	65	152	7	41	copy fasta	HACL1	chr3	15555699	15606569
HACL1_chr3_15555699_15606569	0/0	c0002	1737	51	3	6	36	1	5	copy fasta	HACL1	chr3	15555699	15606569
HACL1_chr3_15555699_15606569	0/0	c0003	1737	7	7	0	0	0	0	copy fasta	HACL1	chr3	15555699	15606569
HACL1_chr3_15555699_15606569	0/0	c0004	1737	6	0	1	5	0	0	copy fasta	HACL1	chr3	15555699	15606569
HACL1_chr3_15555699_15606569	0/0	c0005	1737	3	0	1	0	1	1	copy fasta	HACL1	chr3	15555699	15606569
HACL1_chr3_15555699_15606569	0/0	c0006	1737	2	2	0	0	0	0	copy fasta	HACL1	chr3	15555699	15606569
HACL1_chr3_15555699_15606569	0/0	c0007	1737	1	0	0	1	0	0	copy fasta	HACL1	chr3	15555699	15606569
HACL1_chr3_15555699_15606569	0/0	c0008	1737	1	1	0	0	0	0	copy fasta	HACL1	chr3	15555699	15606569
HACL1_chr3_15555699_15606569	0/0	c0009	1737	1	1	0	0	0	0	copy fasta	HACL1	chr3	15555699	15606569
HACL1_chr3_15555699_15606569	0/0	c0010	1737	1	1	0	0	0	0	copy fasta	HACL1	chr3	15555699	15606569
HACL1_chr3_15555699_15606569	0/0	c0011	1737	1	0	0	1	0	0	copy fasta	HACL1	chr3	15555699	15606569
HACL1_chr3_15555699_15606569	0/0	c0012	1737	1	0	0	1	0	0	copy fasta	HACL1	chr3	15555699	15606569
HACL1_chr3_15555699_15606569	0/0	c0013	1737	1	0	0	0	0	1	copy fasta	HACL1	chr3	15555699	15606569
HACL1_chr3_15555699_15606569	0/0	c0014	1737	1	0	1	0	0	0	copy fasta	HACL1	chr3	15555699	15606569
HACL1_chr3_15555699_15606569	0/0	c0015	1737	1	0	0	0	1	0	copy fasta	HACL1	chr3	15555699	15606569
HADHA_chr2_26185635_26249632	1/1	c0001	2292	212	61	54	74	2	19	copy fasta	HADHA	chr2	26185635	26249632
HADHA_chr2_26185635_26249632	0/0	c0002	2292	44	1	9	25	2	7	copy fasta	HADHA	chr2	26185635	26249632
HADHA_chr2_26185635_26249632	0/0	c0003	2292	10	10	0	0	0	0	copy fasta	HADHA	chr2	26185635	26249632
HADHA_chr2_26185635_26249632	0/0	c0004	2292	2	2	0	0	0	0	copy fasta	HADHA	chr2	26185635	26249632
HADHA_chr2_26185635_26249632	0/0	c0005	2292	2	0	0	2	0	0	copy fasta	HADHA	chr2	26185635	26249632
HADHA_chr2_26185635_26249632	0/0	c0006	2292	1	0	1	0	0	0	copy fasta	HADHA	chr2	26185635	26249632
HADHA_chr2_26185635_26249632	0/0	c0007	2292	1	0	1	0	0	0	copy fasta	HADHA	chr2	26185635	26249632
HADHA_chr2_26185635_26249632	0/0	c0008	2292	1	0	0	1	0	0	copy fasta	HADHA	chr2	26185635	26249632
HADHA_chr2_26185635_26249632	0/0	c0009	2292	1	0	1	0	0	0	copy fasta	HADHA	chr2	26185635	26249632
HADHB_chr2_26239939_26295465	0/1	c0001	1428	127	49	41	14	8	14	copy fasta	HADHB	chr2	26239939	26295465
HADHB_chr2_26239939_26295465	1/0	c0002	1425	95	14	20	54	0	6	copy fasta	HADHB	chr2	26239939	26295465