JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HADHB_chr2_26239939_26295465	0/0	c0003	1428	53	3	7	28	6	9	copy fasta	HADHB	chr2	26239939	26295465
HADHB_chr2_26239939_26295465	0/0	c0004	1428	8	8	0	0	0	0	copy fasta	HADHB	chr2	26239939	26295465
HADHB_chr2_26239939_26295465	0/0	c0005	1428	5	3	2	0	0	0	copy fasta	HADHB	chr2	26239939	26295465
HADHB_chr2_26239939_26295465	0/0	c0006	1428	1	1	0	0	0	0	copy fasta	HADHB	chr2	26239939	26295465
HADHB_chr2_26239939_26295465	0/0	c0007	1425	1	0	0	0	0	1	copy fasta	HADHB	chr2	26239939	26295465
HADH_chr4_107984889_108040171	0/0	c0001	945	249	50	59	90	15	35	copy fasta	HADH	chr4	107984889	108040171
HADH_chr4_107984889_108040171	1/1	c0002	945	45	30	3	5	0	5	copy fasta	HADH	chr4	107984889	108040171
HADH_chr4_107984889_108040171	0/0	c0003	945	3	3	0	0	0	0	copy fasta	HADH	chr4	107984889	108040171
HADH_chr4_107984889_108040171	0/0	c0004	945	3	0	0	3	0	0	copy fasta	HADH	chr4	107984889	108040171
HADH_chr4_107984889_108040171	0/0	c0005	945	2	2	0	0	0	0	copy fasta	HADH	chr4	107984889	108040171
HADH_chr4_107984889_108040171	0/0	c0006	945	1	0	0	0	1	0	copy fasta	HADH	chr4	107984889	108040171
HADH_chr4_107984889_108040171	0/0	c0007	945	1	1	0	0	0	0	copy fasta	HADH	chr4	107984889	108040171
HAGHL_chr16_722106_734715	0/0	c0001	849	196	18	39	109	3	27	copy fasta	HAGHL	chr16	722106	734715
HAGHL_chr16_722106_734715	1/1	c0002	849	144	35	36	44	9	18	copy fasta	HAGHL	chr16	722106	734715
HAGHL_chr16_722106_734715	0/0	c0003	849	22	21	1	0	0	0	copy fasta	HAGHL	chr16	722106	734715
HAGHL_chr16_722106_734715	0/0	c0004	849	17	16	1	0	0	0	copy fasta	HAGHL	chr16	722106	734715
HAGHL_chr16_722106_734715	0/0	c0005	849	9	8	1	0	0	0	copy fasta	HAGHL	chr16	722106	734715
HAGHL_chr16_722106_734715	0/0	c0006	849	3	0	1	0	0	2	copy fasta	HAGHL	chr16	722106	734715
HAGHL_chr16_722106_734715	0/0	c0007	792	1	0	0	1	0	0	copy fasta	HAGHL	chr16	722106	734715
HAGHL_chr16_722106_734715	0/0	c0008	849	1	0	0	0	0	1	copy fasta	HAGHL	chr16	722106	734715
HAGHL_chr16_722106_734715	0/0	c0009	849	1	0	0	1	0	0	copy fasta	HAGHL	chr16	722106	734715
HAGHL_chr16_722106_734715	0/0	c0010	849	1	0	0	1	0	0	copy fasta	HAGHL	chr16	722106	734715
HAGHL_chr16_722106_734715	0/0	c0011	849	1	1	0	0	0	0	copy fasta	HAGHL	chr16	722106	734715
HAGHL_chr16_722106_734715	0/0	c0012	849	1	0	1	0	0	0	copy fasta	HAGHL	chr16	722106	734715
HAGHL_chr16_722106_734715	0/0	c0013	849	1	1	0	0	0	0	copy fasta	HAGHL	chr16	722106	734715
HAGH_chr16_1802629_1831825	1/1	c0001	927	368	71	71	174	9	41	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	c0002	927	20	0	0	18	1	1	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	c0003	927	15	15	0	0	0	0	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	c0004	927	10	4	1	2	0	3	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	c0005	927	6	0	0	6	0	0	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	c0006	927	3	3	0	0	0	0	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	c0007	927	2	0	1	0	0	1	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	c0008	927	1	0	0	1	0	0	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	c0009	927	1	0	0	0	1	0	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	c0010	927	1	0	0	1	0	0	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	c0011	927	1	0	1	0	0	0	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	c0012	943	1	0	0	1	0	0	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	c0013	902	1	0	0	1	0	0	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	c0014	927	1	0	0	1	0	0	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	c0015	927	1	0	0	1	0	0	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	c0016	927	1	0	0	0	1	0	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	c0017	927	1	0	0	0	0	1	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	c0018	927	1	0	0	0	0	1	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	c0019	927	1	1	0	0	0	0	copy fasta	HAGH	chr16	1802629	1831825
HAL_chr12_95967662_96001344	0/1	c0001	1974	232	52	51	92	7	29	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	c0002	1974	74	8	4	50	3	9	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	c0003	1974	47	18	3	21	1	4	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	1/0	c0004	1974	31	1	14	7	5	3	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	c0005	1974	11	5	0	5	1	0	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	c0006	1974	5	5	0	0	0	0	copy fasta	HAL	chr12	95967662	96001344