JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HAL_chr12_95967662_96001344	0/0	c0007	1974	5	0	0	5	0	0	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	c0008	1974	3	0	0	2	0	1	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	c0009	1974	2	0	0	2	0	0	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	c0010	1974	2	2	0	0	0	0	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	c0011	1974	1	1	0	0	0	0	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	c0012	1974	1	0	0	0	1	0	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	c0013	1974	1	0	0	1	0	0	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	c0014	1974	1	0	0	1	0	0	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	c0015	1974	1	0	0	1	0	0	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	c0016	1974	1	0	0	1	0	0	copy fasta	HAL	chr12	95967662	96001344
HAMP_chr19_35277528_35290143	1/1	c0001	255	448	100	82	200	16	48	copy fasta	HAMP	chr19	35277528	35290143
HAND1_chr5_154469972_154483227	1/1	c0001	648	427	89	68	205	16	47	copy fasta	HAND1	chr5	154469972	154483227
HAND1_chr5_154469972_154483227	0/0	c0002	648	10	1	6	0	1	2	copy fasta	HAND1	chr5	154469972	154483227
HAND1_chr5_154469972_154483227	0/0	c0003	648	5	0	3	0	1	1	copy fasta	HAND1	chr5	154469972	154483227
HAND1_chr5_154469972_154483227	0/0	c0004	648	1	1	0	0	0	0	copy fasta	HAND1	chr5	154469972	154483227
HAND1_chr5_154469972_154483227	0/0	c0005	648	1	1	0	0	0	0	copy fasta	HAND1	chr5	154469972	154483227
HAND1_chr5_154469972_154483227	0/0	c0006	648	1	0	0	1	0	0	copy fasta	HAND1	chr5	154469972	154483227
HAND1_chr5_154469972_154483227	0/0	c0007	648	1	0	1	0	0	0	copy fasta	HAND1	chr5	154469972	154483227
HAND2_chr4_173521091_173535229	1/1	c0001	654	375	73	77	164	16	43	copy fasta	HAND2	chr4	173521091	173535229
HAND2_chr4_173521091_173535229	0/0	c0002	654	78	24	0	49	0	5	copy fasta	HAND2	chr4	173521091	173535229
HAND2_chr4_173521091_173535229	0/0	c0003	654	4	0	0	4	0	0	copy fasta	HAND2	chr4	173521091	173535229
HAND2_chr4_173521091_173535229	0/0	c0004	654	1	1	0	0	0	0	copy fasta	HAND2	chr4	173521091	173535229
HAND2_chr4_173521091_173535229	0/0	c0005	654	1	0	0	1	0	0	copy fasta	HAND2	chr4	173521091	173535229
HAND2_chr4_173521091_173535229	0/0	c0006	654	1	0	1	0	0	0	copy fasta	HAND2	chr4	173521091	173535229
HAO1_chr20_7877985_7945458	1/1	c0001	1113	326	78	60	133	11	42	copy fasta	HAO1	chr20	7877985	7945458
HAO1_chr20_7877985_7945458	0/0	c0002	1113	11	10	0	0	1	0	copy fasta	HAO1	chr20	7877985	7945458
HAO1_chr20_7877985_7945458	0/0	c0003	1113	7	7	0	0	0	0	copy fasta	HAO1	chr20	7877985	7945458
HAO1_chr20_7877985_7945458	0/0	c0004	1113	2	2	0	0	0	0	copy fasta	HAO1	chr20	7877985	7945458
HAO1_chr20_7877985_7945458	0/0	c0005	1113	1	1	0	0	0	0	copy fasta	HAO1	chr20	7877985	7945458
HAO1_chr20_7877985_7945458	0/0	c0006	1113	1	0	0	1	0	0	copy fasta	HAO1	chr20	7877985	7945458
HAO2_chr1_119363785_119399130	1/1	c0001	1056	272	65	32	132	9	32	copy fasta	HAO2	chr1	119363785	119399130
HAO2_chr1_119363785_119399130	0/0	c0002	1056	126	6	37	60	9	14	copy fasta	HAO2	chr1	119363785	119399130
HAO2_chr1_119363785_119399130	0/0	c0003	1056	19	18	1	0	0	0	copy fasta	HAO2	chr1	119363785	119399130
HAO2_chr1_119363785_119399130	0/0	c0004	1056	3	3	0	0	0	0	copy fasta	HAO2	chr1	119363785	119399130
HAO2_chr1_119363785_119399130	0/0	c0005	1056	2	0	0	2	0	0	copy fasta	HAO2	chr1	119363785	119399130
HAO2_chr1_119363785_119399130	0/0	c0006	1056	1	1	0	0	0	0	copy fasta	HAO2	chr1	119363785	119399130
HAO2_chr1_119363785_119399130	0/0	c0007	1056	1	0	0	0	0	1	copy fasta	HAO2	chr1	119363785	119399130
HAO2_chr1_119363785_119399130	0/0	c0008	1056	1	0	0	1	0	0	copy fasta	HAO2	chr1	119363785	119399130
HAO2_chr1_119363785_119399130	0/0	c0009	1046	1	0	0	1	0	0	copy fasta	HAO2	chr1	119363785	119399130
HAO2_chr1_119363785_119399130	0/0	c0010	1056	1	1	0	0	0	0	copy fasta	HAO2	chr1	119363785	119399130
HAO2_chr1_119363785_119399130	0/0	c0011	1056	1	0	0	0	0	1	copy fasta	HAO2	chr1	119363785	119399130
HAP1_chr17_41717640_41739643	0/1	c0001	1860	103	17	23	47	2	13	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	c0002	1860	71	16	20	23	8	4	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	c0003	1860	66	2	13	34	4	13	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	1/0	c0004	1860	25	4	2	14	2	2	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	c0005	1860	17	11	1	3	1	1	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	c0006	1860	14	13	1	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	c0007	1860	8	0	2	4	1	1	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	c0008	1860	8	0	5	2	0	1	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	c0009	1860	6	6	0	0	0	0	copy fasta	HAP1	chr17	41717640	41739643