JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HAP1_chr17_41717640_41739643	0/0	c0010	1860	5	4	1	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	c0011	1860	5	5	0	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	c0012	1860	4	4	0	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	c0013	1860	3	3	0	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	c0014	1860	3	0	0	3	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	c0015	1860	3	3	0	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	c0016	1860	3	3	0	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	c0017	1860	2	0	1	1	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	c0018	1860	2	0	0	2	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	c0019	1860	1	0	0	1	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	c0020	1860	1	0	0	1	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	c0021	1860	1	0	1	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	c0022	1860	1	1	0	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	c0023	1860	1	0	0	1	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	c0024	1860	1	0	0	1	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	c0025	1860	1	0	0	1	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	c0026	1860	1	1	0	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	c0027	1860	1	1	0	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	c0028	1860	1	1	0	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	c0029	1860	1	0	1	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	c0030	1860	1	1	0	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	c0031	1860	1	0	1	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	c0032	1860	1	1	0	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	c0033	1860	1	0	0	1	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	c0034	1860	1	0	1	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	c0035	1860	1	0	0	0	0	1	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	c0036	1860	1	0	1	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	c0037	1860	1	0	0	1	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	c0038	1860	1	0	1	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	c0039	1860	1	0	0	1	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	c0040	1860	1	0	0	1	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	c0041	1860	1	0	0	1	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	c0042	1860	1	1	0	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	c0043	1860	1	0	0	1	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	c0044	1860	1	0	1	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAPLN1_chr5_83632805_83725855	0/1	c0001	1065	249	50	36	112	12	38	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	1/0	c0002	1065	89	10	14	49	3	12	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	c0003	1065	24	21	3	0	0	0	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	c0004	1065	5	1	0	4	0	0	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	c0005	1065	1	0	1	0	0	0	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	c0006	1065	1	1	0	0	0	0	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	c0007	1065	1	0	0	1	0	0	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	c0008	1065	1	0	0	0	1	0	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	c0009	1065	1	1	0	0	0	0	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN2_chr1_156614415_156630725	1/1	c0001	1023	413	95	78	182	16	40	copy fasta	HAPLN2	chr1	156614415	156630725
HAPLN2_chr1_156614415_156630725	0/0	c0002	1023	5	5	0	0	0	0	copy fasta	HAPLN2	chr1	156614415	156630725
HAPLN3_chr15_88872294_88900544	1/1	c0001	1083	225	15	41	130	10	27	copy fasta	HAPLN3	chr15	88872294	88900544
HAPLN3_chr15_88872294_88900544	0/0	c0002	1083	69	52	9	0	2	6	copy fasta	HAPLN3	chr15	88872294	88900544
HAPLN3_chr15_88872294_88900544	0/0	c0003	1083	45	5	12	18	2	8	copy fasta	HAPLN3	chr15	88872294	88900544
HAPLN3_chr15_88872294_88900544	0/0	c0004	1083	35	3	1	30	1	0	copy fasta	HAPLN3	chr15	88872294	88900544