JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HAPLN3_chr15_88872294_88900544	0/0	c0005	1083	12	7	1	2	0	2	copy fasta	HAPLN3	chr15	88872294	88900544
HAPLN3_chr15_88872294_88900544	0/0	c0006	1083	10	3	6	0	0	1	copy fasta	HAPLN3	chr15	88872294	88900544
HAPLN3_chr15_88872294_88900544	0/0	c0007	1083	9	0	5	1	3	0	copy fasta	HAPLN3	chr15	88872294	88900544
HAPLN3_chr15_88872294_88900544	0/0	c0008	1083	8	0	1	7	0	0	copy fasta	HAPLN3	chr15	88872294	88900544
HAPLN3_chr15_88872294_88900544	0/0	c0009	1083	5	4	1	0	0	0	copy fasta	HAPLN3	chr15	88872294	88900544
HAPLN3_chr15_88872294_88900544	0/0	c0010	1083	5	5	0	0	0	0	copy fasta	HAPLN3	chr15	88872294	88900544
HAPLN3_chr15_88872294_88900544	0/0	c0011	1083	4	0	0	4	0	0	copy fasta	HAPLN3	chr15	88872294	88900544
HAPLN3_chr15_88872294_88900544	0/0	c0012	1083	3	0	1	1	0	1	copy fasta	HAPLN3	chr15	88872294	88900544
HAPLN3_chr15_88872294_88900544	0/0	c0013	1083	1	0	0	1	0	0	copy fasta	HAPLN3	chr15	88872294	88900544
HAPLN3_chr15_88872294_88900544	0/0	c0014	1083	1	1	0	0	0	0	copy fasta	HAPLN3	chr15	88872294	88900544
HAPLN3_chr15_88872294_88900544	0/0	c0015	1083	1	0	0	1	0	0	copy fasta	HAPLN3	chr15	88872294	88900544
HAPLN3_chr15_88872294_88900544	0/0	c0016	1083	1	0	0	0	0	1	copy fasta	HAPLN3	chr15	88872294	88900544
HAPLN3_chr15_88872294_88900544	0/0	c0017	1083	1	0	0	1	0	0	copy fasta	HAPLN3	chr15	88872294	88900544
HAPLN3_chr15_88872294_88900544	0/0	c0018	1083	1	1	0	0	0	0	copy fasta	HAPLN3	chr15	88872294	88900544
HAPLN4_chr19_19249756_19267804	1/1	c0001	1209	236	47	47	109	14	17	copy fasta	HAPLN4	chr19	19249756	19267804
HAPLN4_chr19_19249756_19267804	0/0	c0002	1209	153	39	29	55	4	26	copy fasta	HAPLN4	chr19	19249756	19267804
HAPLN4_chr19_19249756_19267804	0/0	c0003	1209	3	3	0	0	0	0	copy fasta	HAPLN4	chr19	19249756	19267804
HAPLN4_chr19_19249756_19267804	0/0	c0004	1209	3	3	0	0	0	0	copy fasta	HAPLN4	chr19	19249756	19267804
HAPLN4_chr19_19249756_19267804	0/0	c0005	1209	1	1	0	0	0	0	copy fasta	HAPLN4	chr19	19249756	19267804
HAPLN4_chr19_19249756_19267804	0/0	c0006	1209	1	1	0	0	0	0	copy fasta	HAPLN4	chr19	19249756	19267804
HAPLN4_chr19_19249756_19267804	0/0	c0007	1209	1	0	0	0	0	1	copy fasta	HAPLN4	chr19	19249756	19267804
HAPLN4_chr19_19249756_19267804	0/0	c0008	1209	1	0	0	1	0	0	copy fasta	HAPLN4	chr19	19249756	19267804
HAPLN4_chr19_19249756_19267804	0/0	c0009	1209	1	0	0	1	0	0	copy fasta	HAPLN4	chr19	19249756	19267804
HAPSTR1_chr16_9086644_9126635	1/1	c0001	828	375	82	67	172	16	36	copy fasta	HAPSTR1	chr16	9086644	9126635
HAPSTR1_chr16_9086644_9126635	0/0	c0002	828	13	13	0	0	0	0	copy fasta	HAPSTR1	chr16	9086644	9126635
HAPSTR1_chr16_9086644_9126635	0/0	c0003	828	4	0	0	4	0	0	copy fasta	HAPSTR1	chr16	9086644	9126635
HAPSTR1_chr16_9086644_9126635	0/0	c0004	828	2	0	0	0	0	2	copy fasta	HAPSTR1	chr16	9086644	9126635
HAPSTR1_chr16_9086644_9126635	0/0	c0005	828	1	1	0	0	0	0	copy fasta	HAPSTR1	chr16	9086644	9126635
HAPSTR1_chr16_9086644_9126635	0/0	c0006	828	1	1	0	0	0	0	copy fasta	HAPSTR1	chr16	9086644	9126635
HAPSTR1_chr16_9086644_9126635	0/0	c0007	828	1	0	1	0	0	0	copy fasta	HAPSTR1	chr16	9086644	9126635
HAPSTR1_chr16_9086644_9126635	0/0	c0008	828	1	1	0	0	0	0	copy fasta	HAPSTR1	chr16	9086644	9126635
HAPSTR2_chrX_140086678_140097911	1/1	c0001	822	302	67	57	136	12	28	copy fasta	HAPSTR2	chrX	140086678	140097911
HAPSTR2_chrX_140086678_140097911	0/0	c0002	822	6	6	0	0	0	0	copy fasta	HAPSTR2	chrX	140086678	140097911
HAPSTR2_chrX_140086678_140097911	0/0	c0003	822	2	0	0	2	0	0	copy fasta	HAPSTR2	chrX	140086678	140097911
HAPSTR2_chrX_140086678_140097911	0/0	c0004	822	1	0	0	1	0	0	copy fasta	HAPSTR2	chrX	140086678	140097911
HAPSTR2_chrX_140086678_140097911	0/0	c0005	822	1	0	0	1	0	0	copy fasta	HAPSTR2	chrX	140086678	140097911
HARBI1_chr11_46597861_46622227	1/1	c0001	1050	255	92	47	72	8	34	copy fasta	HARBI1	chr11	46597861	46622227
HARBI1_chr11_46597861_46622227	0/0	c0002	1050	2	1	1	0	0	0	copy fasta	HARBI1	chr11	46597861	46622227
HARBI1_chr11_46597861_46622227	0/0	c0003	1050	1	1	0	0	0	0	copy fasta	HARBI1	chr11	46597861	46622227
HARS1_chr5_140668905_140696370	1/1	c0001	1530	349	80	52	170	12	33	copy fasta	HARS1	chr5	140668905	140696370
HARS1_chr5_140668905_140696370	0/0	c0002	1530	13	7	2	0	0	4	copy fasta	HARS1	chr5	140668905	140696370
HARS1_chr5_140668905_140696370	0/0	c0003	1530	5	0	2	0	3	0	copy fasta	HARS1	chr5	140668905	140696370
HARS1_chr5_140668905_140696370	0/0	c0004	1530	5	0	0	5	0	0	copy fasta	HARS1	chr5	140668905	140696370
HARS1_chr5_140668905_140696370	0/0	c0005	1530	4	0	0	3	0	1	copy fasta	HARS1	chr5	140668905	140696370
HARS1_chr5_140668905_140696370	0/0	c0006	1530	3	3	0	0	0	0	copy fasta	HARS1	chr5	140668905	140696370
HARS1_chr5_140668905_140696370	0/0	c0007	1530	2	0	0	2	0	0	copy fasta	HARS1	chr5	140668905	140696370
HARS1_chr5_140668905_140696370	0/0	c0008	1530	2	2	0	0	0	0	copy fasta	HARS1	chr5	140668905	140696370
HARS1_chr5_140668905_140696370	0/0	c0009	1530	1	0	0	0	1	0	copy fasta	HARS1	chr5	140668905	140696370
HARS2_chr5_140686455_140704305	1/1	c0001	1521	373	95	51	177	15	33	copy fasta	HARS2	chr5	140686455	140704305
HARS2_chr5_140686455_140704305	0/0	c0002	1521	3	3	0	0	0	0	copy fasta	HARS2	chr5	140686455	140704305