JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HARS2_chr5_140686455_140704305	0/0	c0003	1521	2	0	2	0	0	0	copy fasta	HARS2	chr5	140686455	140704305
HARS2_chr5_140686455_140704305	0/0	c0004	1521	1	0	0	1	0	0	copy fasta	HARS2	chr5	140686455	140704305
HARS2_chr5_140686455_140704305	0/0	c0005	1521	1	0	0	0	0	1	copy fasta	HARS2	chr5	140686455	140704305
HARS2_chr5_140686455_140704305	0/0	c0006	1521	1	0	1	0	0	0	copy fasta	HARS2	chr5	140686455	140704305
HARS2_chr5_140686455_140704305	0/0	c0007	1521	1	0	0	1	0	0	copy fasta	HARS2	chr5	140686455	140704305
HARS2_chr5_140686455_140704305	0/0	c0008	1521	1	0	0	1	0	0	copy fasta	HARS2	chr5	140686455	140704305
HARS2_chr5_140686455_140704305	0/0	c0009	1521	1	0	0	0	1	0	copy fasta	HARS2	chr5	140686455	140704305
HAS1_chr19_51708112_51728991	0/0	c0001	1734	161	29	27	80	4	21	copy fasta	HAS1	chr19	51708112	51728991
HAS1_chr19_51708112_51728991	0/0	c0002	1734	107	15	27	46	4	15	copy fasta	HAS1	chr19	51708112	51728991
HAS1_chr19_51708112_51728991	0/0	c0003	1734	89	4	5	77	2	1	copy fasta	HAS1	chr19	51708112	51728991
HAS1_chr19_51708112_51728991	1/1	c0004	1734	55	20	19	1	4	9	copy fasta	HAS1	chr19	51708112	51728991
HAS1_chr19_51708112_51728991	0/0	c0005	1734	14	13	1	0	0	0	copy fasta	HAS1	chr19	51708112	51728991
HAS1_chr19_51708112_51728991	0/0	c0006	1734	9	8	0	0	0	1	copy fasta	HAS1	chr19	51708112	51728991
HAS1_chr19_51708112_51728991	0/0	c0007	1734	5	5	0	0	0	0	copy fasta	HAS1	chr19	51708112	51728991
HAS1_chr19_51708112_51728991	0/0	c0008	1734	3	0	0	3	0	0	copy fasta	HAS1	chr19	51708112	51728991
HAS1_chr19_51708112_51728991	0/0	c0009	1734	2	0	0	2	0	0	copy fasta	HAS1	chr19	51708112	51728991
HAS1_chr19_51708112_51728991	0/0	c0010	1734	2	0	0	0	1	1	copy fasta	HAS1	chr19	51708112	51728991
HAS1_chr19_51708112_51728991	0/0	c0011	1734	1	0	0	1	0	0	copy fasta	HAS1	chr19	51708112	51728991
HAS1_chr19_51708112_51728991	0/0	c0012	1734	1	1	0	0	0	0	copy fasta	HAS1	chr19	51708112	51728991
HAS1_chr19_51708112_51728991	0/0	c0013	1734	1	1	0	0	0	0	copy fasta	HAS1	chr19	51708112	51728991
HAS1_chr19_51708112_51728991	0/0	c0014	1734	1	0	0	0	0	1	copy fasta	HAS1	chr19	51708112	51728991
HAS1_chr19_51708112_51728991	0/0	c0015	1734	1	0	0	1	0	0	copy fasta	HAS1	chr19	51708112	51728991
HAS1_chr19_51708112_51728991	0/0	c0016	1734	1	1	0	0	0	0	copy fasta	HAS1	chr19	51708112	51728991
HAS1_chr19_51708112_51728991	0/0	c0017	1734	1	0	1	0	0	0	copy fasta	HAS1	chr19	51708112	51728991
HAS1_chr19_51708112_51728991	0/0	c0018	1734	1	0	0	1	0	0	copy fasta	HAS1	chr19	51708112	51728991
HAS1_chr19_51708112_51728991	0/0	c0019	1734	1	0	0	0	1	0	copy fasta	HAS1	chr19	51708112	51728991
HAS1_chr19_51708112_51728991	0/0	c0020	1734	1	0	0	1	0	0	copy fasta	HAS1	chr19	51708112	51728991
HAS1_chr19_51708112_51728991	0/0	c0021	1734	1	0	0	0	0	1	copy fasta	HAS1	chr19	51708112	51728991
HAS1_chr19_51708112_51728991	0/0	c0022	1734	1	0	0	1	0	0	copy fasta	HAS1	chr19	51708112	51728991
HAS1_chr19_51708112_51728991	0/0	c0023	1734	1	1	0	0	0	0	copy fasta	HAS1	chr19	51708112	51728991
HAS1_chr19_51708112_51728991	0/0	c0024	1734	1	0	0	1	0	0	copy fasta	HAS1	chr19	51708112	51728991
HAS1_chr19_51708112_51728991	0/0	c0025	1734	1	0	0	1	0	0	copy fasta	HAS1	chr19	51708112	51728991
HAS1_chr19_51708112_51728991	0/0	c0026	1734	1	0	1	0	0	0	copy fasta	HAS1	chr19	51708112	51728991
HAS1_chr19_51708112_51728991	0/0	c0027	1734	1	0	1	0	0	0	copy fasta	HAS1	chr19	51708112	51728991
HAS2_chr8_121607116_121646440	1/1	c0001	1659	354	77	71	150	13	41	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	c0002	1659	11	8	3	0	0	0	copy fasta	HAS2	chr8	121607116	121646440
HAS2_chr8_121607116_121646440	0/0	c0003	1659	11	7	2	0	1	1	copy fasta	HAS2	chr8	121607116	121646440
HAS3_chr16_69100653_69122660	1/1	c0001	1662	242	74	42	94	7	23	copy fasta	HAS3	chr16	69100653	69122660
HAS3_chr16_69100653_69122660	0/0	c0002	1662	116	3	30	62	6	15	copy fasta	HAS3	chr16	69100653	69122660
HAS3_chr16_69100653_69122660	0/0	c0003	1662	21	4	3	6	1	7	copy fasta	HAS3	chr16	69100653	69122660
HAS3_chr16_69100653_69122660	0/0	c0004	1662	10	9	1	0	0	0	copy fasta	HAS3	chr16	69100653	69122660
HAS3_chr16_69100653_69122660	0/0	c0005	1662	5	0	0	5	0	0	copy fasta	HAS3	chr16	69100653	69122660
HAS3_chr16_69100653_69122660	0/0	c0006	1662	2	2	0	0	0	0	copy fasta	HAS3	chr16	69100653	69122660
HAS3_chr16_69100653_69122660	0/0	c0007	1662	2	0	0	2	0	0	copy fasta	HAS3	chr16	69100653	69122660
HAS3_chr16_69100653_69122660	0/0	c0008	1662	2	0	1	0	0	1	copy fasta	HAS3	chr16	69100653	69122660
HAS3_chr16_69100653_69122660	0/0	c0009	1662	2	0	0	2	0	0	copy fasta	HAS3	chr16	69100653	69122660
HAS3_chr16_69100653_69122660	0/0	c0010	1662	1	0	0	1	0	0	copy fasta	HAS3	chr16	69100653	69122660
HAS3_chr16_69100653_69122660	0/0	c0011	1662	1	1	0	0	0	0	copy fasta	HAS3	chr16	69100653	69122660
HAS3_chr16_69100653_69122660	0/0	c0012	1662	1	0	0	1	0	0	copy fasta	HAS3	chr16	69100653	69122660
HAS3_chr16_69100653_69122660	0/0	c0013	1662	1	0	0	1	0	0	copy fasta	HAS3	chr16	69100653	69122660