Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AKAP4_chrX_50185777_50206007	0/0	c0007	2565	2	0	0	2	0	0	copy fasta	AKAP4	chrX	50185777	50206007
AKAP4_chrX_50185777_50206007	0/0	c0008	2565	1	0	0	1	0	0	copy fasta	AKAP4	chrX	50185777	50206007
AKAP4_chrX_50185777_50206007	0/0	c0009	2565	1	0	0	0	1	0	copy fasta	AKAP4	chrX	50185777	50206007
AKAP4_chrX_50185777_50206007	0/0	c0010	2565	1	0	1	0	0	0	copy fasta	AKAP4	chrX	50185777	50206007
AKAP4_chrX_50185777_50206007	0/0	c0011	2565	1	1	0	0	0	0	copy fasta	AKAP4	chrX	50185777	50206007
AKAP5_chr14_64460499_64479503	0/1	c0001	1284	355	64	68	178	10	34	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	1/0	c0002	1284	20	0	0	17	0	2	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	c0003	1284	15	0	6	0	4	5	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	c0004	1284	13	11	2	0	0	0	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	c0005	1284	10	10	0	0	0	0	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	c0006	1284	6	6	0	0	0	0	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	c0007	1284	3	0	0	3	0	0	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	c0008	1284	3	1	2	0	0	0	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	c0009	1284	1	0	0	0	0	1	copy fasta	AKAP5	chr14	64460499	64479503
AKAP6_chr14_32324298_32842684	0/0	c0001	6960	21	10	2	7	0	2	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0002	6960	15	4	5	4	1	1	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0003	6960	10	2	3	2	0	3	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0004	6960	8	8	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0005	6960	7	0	2	3	0	2	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0006	6960	6	5	0	0	0	1	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0007	6960	6	4	2	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0008	6960	5	5	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/1	c0009	6960	5	0	0	3	1	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0010	6960	5	1	0	2	0	2	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0011	6960	5	2	0	3	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0012	6960	3	3	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0013	6960	3	0	0	1	0	2	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0014	6960	3	0	1	2	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0015	6960	3	1	1	0	0	1	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0016	6960	2	0	1	0	1	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0017	6960	2	2	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0018	6960	2	2	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0019	6960	2	2	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0020	6960	2	0	1	1	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0021	6960	1	1	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0022	6960	1	1	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0023	6960	1	1	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0024	6960	1	1	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0025	6960	1	1	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0026	6960	1	1	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0027	6960	1	1	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0028	6960	1	1	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0029	6960	1	0	0	0	1	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0030	6960	1	1	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0031	6960	1	0	1	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0032	6960	1	0	0	0	1	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0033	6960	1	1	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0034	6960	1	0	0	0	0	1	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0035	6960	1	0	0	0	0	1	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0036	6960	1	1	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684