JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HAS3_chr16_69100653_69122660	0/0	c0014	1662	1	0	0	1	0	0	copy fasta	HAS3	chr16	69100653	69122660
HAS3_chr16_69100653_69122660	0/0	c0015	1662	1	0	1	0	0	0	copy fasta	HAS3	chr16	69100653	69122660
HAS3_chr16_69100653_69122660	0/0	c0016	1662	1	0	0	1	0	0	copy fasta	HAS3	chr16	69100653	69122660
HAS3_chr16_69100653_69122660	0/0	c0017	1662	1	1	0	0	0	0	copy fasta	HAS3	chr16	69100653	69122660
HASPIN_chr17_3718903_3731699	1/1	c0001	2397	206	32	50	103	6	13	copy fasta	HASPIN	chr17	3718903	3731699
HASPIN_chr17_3718903_3731699	0/0	c0002	2397	106	1	17	58	5	25	copy fasta	HASPIN	chr17	3718903	3731699
HASPIN_chr17_3718903_3731699	0/0	c0003	2397	48	45	3	0	0	0	copy fasta	HASPIN	chr17	3718903	3731699
HASPIN_chr17_3718903_3731699	0/0	c0004	2397	33	4	9	13	5	2	copy fasta	HASPIN	chr17	3718903	3731699
HASPIN_chr17_3718903_3731699	0/0	c0005	2397	2	0	2	0	0	0	copy fasta	HASPIN	chr17	3718903	3731699
HASPIN_chr17_3718903_3731699	0/0	c0006	2397	2	0	0	0	2	0	copy fasta	HASPIN	chr17	3718903	3731699
HASPIN_chr17_3718903_3731699	0/0	c0007	2397	2	2	0	0	0	0	copy fasta	HASPIN	chr17	3718903	3731699
HASPIN_chr17_3718903_3731699	0/0	c0008	2397	2	2	0	0	0	0	copy fasta	HASPIN	chr17	3718903	3731699
HASPIN_chr17_3718903_3731699	0/0	c0009	2361	1	1	0	0	0	0	copy fasta	HASPIN	chr17	3718903	3731699
HASPIN_chr17_3718903_3731699	0/0	c0010	2397	1	0	0	1	0	0	copy fasta	HASPIN	chr17	3718903	3731699
HASPIN_chr17_3718903_3731699	0/0	c0011	2397	1	0	0	1	0	0	copy fasta	HASPIN	chr17	3718903	3731699
HASPIN_chr17_3718903_3731699	0/0	c0012	2397	1	0	0	1	0	0	copy fasta	HASPIN	chr17	3718903	3731699
HASPIN_chr17_3718903_3731699	0/0	c0013	2397	1	0	0	1	0	0	copy fasta	HASPIN	chr17	3718903	3731699
HASPIN_chr17_3718903_3731699	0/0	c0014	2397	1	0	0	1	0	0	copy fasta	HASPIN	chr17	3718903	3731699
HASPIN_chr17_3718903_3731699	0/0	c0015	2397	1	1	0	0	0	0	copy fasta	HASPIN	chr17	3718903	3731699
HASPIN_chr17_3718903_3731699	0/0	c0016	2397	1	0	1	0	0	0	copy fasta	HASPIN	chr17	3718903	3731699
HASPIN_chr17_3718903_3731699	0/0	c0017	2397	1	0	0	1	0	0	copy fasta	HASPIN	chr17	3718903	3731699
HASPIN_chr17_3718903_3731699	0/0	c0018	2397	1	1	0	0	0	0	copy fasta	HASPIN	chr17	3718903	3731699
HASPIN_chr17_3718903_3731699	0/0	c0019	2397	1	0	0	1	0	0	copy fasta	HASPIN	chr17	3718903	3731699
HASPIN_chr17_3718903_3731699	0/0	c0020	2397	1	1	0	0	0	0	copy fasta	HASPIN	chr17	3718903	3731699
HASPIN_chr17_3718903_3731699	0/0	c0021	2397	1	0	0	1	0	0	copy fasta	HASPIN	chr17	3718903	3731699
HAT1_chr2_171917461_171988686	0/1	c0001	1260	317	68	58	140	8	42	copy fasta	HAT1	chr2	171917461	171988686
HAT1_chr2_171917461_171988686	1/0	c0002	1260	9	8	0	0	0	0	copy fasta	HAT1	chr2	171917461	171988686
HAUS1_chr18_46099385_46133333	1/1	c0001	837	353	80	64	148	16	43	copy fasta	HAUS1	chr18	46099385	46133333
HAUS1_chr18_46099385_46133333	0/0	c0002	837	3	0	0	3	0	0	copy fasta	HAUS1	chr18	46099385	46133333
HAUS1_chr18_46099385_46133333	0/0	c0003	837	3	3	0	0	0	0	copy fasta	HAUS1	chr18	46099385	46133333
HAUS1_chr18_46099385_46133333	0/0	c0004	837	3	3	0	0	0	0	copy fasta	HAUS1	chr18	46099385	46133333
HAUS1_chr18_46099385_46133333	0/0	c0005	837	2	2	0	0	0	0	copy fasta	HAUS1	chr18	46099385	46133333
HAUS1_chr18_46099385_46133333	0/0	c0006	837	2	0	0	2	0	0	copy fasta	HAUS1	chr18	46099385	46133333
HAUS1_chr18_46099385_46133333	0/0	c0007	837	2	2	0	0	0	0	copy fasta	HAUS1	chr18	46099385	46133333
HAUS1_chr18_46099385_46133333	0/0	c0008	837	2	0	0	0	0	2	copy fasta	HAUS1	chr18	46099385	46133333
HAUS1_chr18_46099385_46133333	0/0	c0009	837	1	0	0	0	0	1	copy fasta	HAUS1	chr18	46099385	46133333
HAUS1_chr18_46099385_46133333	0/0	c0010	776	1	0	0	1	0	0	copy fasta	HAUS1	chr18	46099385	46133333
HAUS2_chr15_42543838_42574994	1/1	c0001	708	326	70	65	127	18	44	copy fasta	HAUS2	chr15	42543838	42574994
HAUS2_chr15_42543838_42574994	0/0	c0002	708	19	16	3	0	0	0	copy fasta	HAUS2	chr15	42543838	42574994
HAUS2_chr15_42543838_42574994	0/0	c0003	708	2	2	0	0	0	0	copy fasta	HAUS2	chr15	42543838	42574994
HAUS2_chr15_42543838_42574994	0/0	c0004	708	1	0	0	1	0	0	copy fasta	HAUS2	chr15	42543838	42574994
HAUS2_chr15_42543838_42574994	0/0	c0005	708	1	0	0	1	0	0	copy fasta	HAUS2	chr15	42543838	42574994
HAUS2_chr15_42543838_42574994	0/0	c0006	708	1	0	0	1	0	0	copy fasta	HAUS2	chr15	42543838	42574994
HAUS3_chr4_2223349_2247121	1/1	c0001	1812	298	77	52	140	9	18	copy fasta	HAUS3	chr4	2223349	2247121
HAUS3_chr4_2223349_2247121	0/0	c0002	1812	24	9	5	7	1	2	copy fasta	HAUS3	chr4	2223349	2247121
HAUS3_chr4_2223349_2247121	0/0	c0003	1812	2	2	0	0	0	0	copy fasta	HAUS3	chr4	2223349	2247121
HAUS3_chr4_2223349_2247121	0/0	c0004	1812	2	2	0	0	0	0	copy fasta	HAUS3	chr4	2223349	2247121
HAUS3_chr4_2223349_2247121	0/0	c0005	1812	1	0	1	0	0	0	copy fasta	HAUS3	chr4	2223349	2247121
HAUS3_chr4_2223349_2247121	0/0	c0006	1812	1	1	0	0	0	0	copy fasta	HAUS3	chr4	2223349	2247121
HAUS3_chr4_2223349_2247121	0/0	c0007	1812	1	0	0	1	0	0	copy fasta	HAUS3	chr4	2223349	2247121