JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HAUS3_chr4_2223349_2247121	0/0	c0008	1812	1	1	0	0	0	0	copy fasta	HAUS3	chr4	2223349	2247121
HAUS4_chr14_22941228_22962090	1/0	c0001	1092	311	93	64	98	14	41	copy fasta	HAUS4	chr14	22941228	22962090
HAUS4_chr14_22941228_22962090	0/0	c0002	1092	3	3	0	0	0	0	copy fasta	HAUS4	chr14	22941228	22962090
HAUS4_chr14_22941228_22962090	0/0	c0003	1092	1	0	0	0	0	1	copy fasta	HAUS4	chr14	22941228	22962090
HAUS4_chr14_22941228_22962090	0/0	c0004	1092	1	0	0	1	0	0	copy fasta	HAUS4	chr14	22941228	22962090
HAUS4_chr14_22941228_22962090	0/0	c0005	1092	1	0	0	1	0	0	copy fasta	HAUS4	chr14	22941228	22962090
HAUS5_chr19_35607735_35630355	1/1	c0001	1902	367	75	78	167	11	34	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	c0002	1902	28	14	0	13	0	1	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	c0003	1902	6	1	1	0	1	3	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	c0004	1902	5	0	0	5	0	0	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	c0005	1902	4	4	0	0	0	0	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	c0006	1902	2	2	0	0	0	0	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	c0007	1902	2	0	0	2	0	0	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	c0008	1902	1	0	0	1	0	0	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	c0009	1902	1	0	1	0	0	0	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	c0010	1902	1	0	0	0	0	1	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	c0011	1902	1	0	0	1	0	0	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	c0012	1902	1	0	0	1	0	0	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	c0013	1902	1	1	0	0	0	0	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	c0014	1902	1	0	0	1	0	0	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	c0015	1902	1	0	0	1	0	0	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	c0016	1902	1	1	0	0	0	0	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	c0017	1902	1	0	1	0	0	0	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	c0018	1902	1	1	0	0	0	0	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	c0019	1902	1	0	1	0	0	0	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	c0020	1902	1	0	0	0	0	1	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	c0021	1902	1	0	0	1	0	0	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	c0022	1902	1	1	0	0	0	0	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	c0023	1902	1	0	0	1	0	0	copy fasta	HAUS5	chr19	35607735	35630355
HAUS6_chr9_19048141_19107904	0/0	c0001	2868	110	11	24	50	5	20	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	1/0	c0002	2868	93	7	15	61	3	6	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	c0003	2868	38	7	7	21	1	2	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	c0004	2868	31	17	5	7	2	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	c0005	2868	27	17	1	3	0	6	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	c0006	2868	23	4	7	4	3	5	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	c0007	2868	15	0	2	13	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/1	c0008	2868	9	1	2	0	2	3	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	c0009	2868	6	0	0	6	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	c0010	2868	4	0	0	4	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	c0011	2868	4	4	0	0	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	c0012	2868	4	4	0	0	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	c0013	2868	4	3	1	0	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	c0014	2868	3	3	0	0	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	c0015	2868	2	0	0	1	0	1	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	c0016	2868	2	2	0	0	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	c0017	2868	2	2	0	0	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	c0018	2868	2	2	0	0	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	c0019	2868	2	1	0	1	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	c0020	2868	2	0	1	0	0	1	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	c0021	2868	2	2	0	0	0	0	copy fasta	HAUS6	chr9	19048141	19107904