JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HAUS6_chr9_19048141_19107904	0/0	c0022	2868	1	0	0	0	0	1	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	c0023	2868	1	0	0	0	0	1	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	c0024	2868	1	1	0	0	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	c0025	2868	1	0	0	1	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	c0026	2868	1	1	0	0	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	c0027	2868	1	0	0	1	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	c0028	2868	1	0	0	1	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	c0029	2868	1	0	0	1	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	c0030	2868	1	0	0	1	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	c0031	2868	1	0	0	1	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	c0032	2868	1	0	0	0	0	1	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	c0033	2868	1	0	0	1	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	c0034	2868	1	1	0	0	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	c0035	2868	1	0	0	1	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	c0036	2868	1	0	0	0	0	1	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	c0037	2868	1	1	0	0	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	c0038	2868	1	0	1	0	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	c0039	2868	1	1	0	0	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	c0040	2868	1	0	0	1	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	c0041	2868	1	1	0	0	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	c0042	2868	1	1	0	0	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS7_chrX_153442668_153475576	1/0	c0001	1077	267	43	43	142	8	30	copy fasta	HAUS7	chrX	153442668	153475576
HAUS7_chrX_153442668_153475576	0/0	c0002	1077	28	27	1	0	0	0	copy fasta	HAUS7	chrX	153442668	153475576
HAUS7_chrX_153442668_153475576	0/1	c0003	1077	8	0	5	0	2	0	copy fasta	HAUS7	chrX	153442668	153475576
HAUS7_chrX_153442668_153475576	0/0	c0004	1077	4	4	0	0	0	0	copy fasta	HAUS7	chrX	153442668	153475576
HAUS7_chrX_153442668_153475576	0/0	c0005	1077	3	2	1	0	0	0	copy fasta	HAUS7	chrX	153442668	153475576
HAUS7_chrX_153442668_153475576	0/0	c0006	1077	2	0	1	0	0	1	copy fasta	HAUS7	chrX	153442668	153475576
HAUS7_chrX_153442668_153475576	0/0	c0007	1077	1	0	0	0	0	1	copy fasta	HAUS7	chrX	153442668	153475576
HAUS7_chrX_153442668_153475576	0/0	c0008	1078	1	0	0	0	1	0	copy fasta	HAUS7	chrX	153442668	153475576
HAUS7_chrX_153442668_153475576	0/0	c0009	1077	1	1	0	0	0	0	copy fasta	HAUS7	chrX	153442668	153475576
HAUS7_chrX_153442668_153475576	0/0	c0010	1077	1	1	0	0	0	0	copy fasta	HAUS7	chrX	153442668	153475576
HAUS7_chrX_153442668_153475576	0/0	c0011	1077	1	0	1	0	0	0	copy fasta	HAUS7	chrX	153442668	153475576
HAUS7_chrX_153442668_153475576	0/0	c0012	1077	1	0	0	1	0	0	copy fasta	HAUS7	chrX	153442668	153475576
HAUS7_chrX_153442668_153475576	0/0	c0013	1076	1	0	0	1	0	0	copy fasta	HAUS7	chrX	153442668	153475576
HAUS7_chrX_153442668_153475576	0/0	c0014	1078	1	0	0	1	0	0	copy fasta	HAUS7	chrX	153442668	153475576
HAUS7_chrX_153442668_153475576	0/0	c0015	1078	1	0	0	1	0	0	copy fasta	HAUS7	chrX	153442668	153475576
HAUS8_chr19_17044729_17080452	0/0	c0001	1233	144	37	15	57	8	27	copy fasta	HAUS8	chr19	17044729	17080452
HAUS8_chr19_17044729_17080452	1/0	c0002	1233	134	15	13	94	1	10	copy fasta	HAUS8	chr19	17044729	17080452
HAUS8_chr19_17044729_17080452	0/1	c0003	1233	53	22	18	2	5	5	copy fasta	HAUS8	chr19	17044729	17080452
HAUS8_chr19_17044729_17080452	0/0	c0004	1233	18	7	3	7	0	1	copy fasta	HAUS8	chr19	17044729	17080452
HAUS8_chr19_17044729_17080452	0/0	c0005	1233	16	1	9	5	0	1	copy fasta	HAUS8	chr19	17044729	17080452
HAUS8_chr19_17044729_17080452	0/0	c0006	1233	16	0	9	7	0	0	copy fasta	HAUS8	chr19	17044729	17080452
HAUS8_chr19_17044729_17080452	0/0	c0007	1233	9	0	7	2	0	0	copy fasta	HAUS8	chr19	17044729	17080452
HAUS8_chr19_17044729_17080452	0/0	c0008	1233	7	7	0	0	0	0	copy fasta	HAUS8	chr19	17044729	17080452
HAUS8_chr19_17044729_17080452	0/0	c0009	1233	1	1	0	0	0	0	copy fasta	HAUS8	chr19	17044729	17080452
HAUS8_chr19_17044729_17080452	0/0	c0010	1233	1	0	0	1	0	0	copy fasta	HAUS8	chr19	17044729	17080452
HAUS8_chr19_17044729_17080452	0/0	c0011	1233	1	0	0	1	0	0	copy fasta	HAUS8	chr19	17044729	17080452
HAVCR1_chr5_157024413_157064116	0/0	c0001	1080	125	7	20	75	5	18	copy fasta	HAVCR1	chr5	157024413	157064116
HAVCR1_chr5_157024413_157064116	0/0	c0002	1095	89	35	10	32	4	8	copy fasta	HAVCR1	chr5	157024413	157064116
HAVCR1_chr5_157024413_157064116	0/1	c0003	1080	62	5	21	21	5	9	copy fasta	HAVCR1	chr5	157024413	157064116