JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HAVCR1_chr5_157024413_157064116	1/0	c0004	1095	25	8	8	4	3	1	copy fasta	HAVCR1	chr5	157024413	157064116
HAVCR1_chr5_157024413_157064116	0/0	c0005	1098	13	7	1	3	0	2	copy fasta	HAVCR1	chr5	157024413	157064116
HAVCR1_chr5_157024413_157064116	0/0	c0006	1098	8	5	3	0	0	0	copy fasta	HAVCR1	chr5	157024413	157064116
HAVCR1_chr5_157024413_157064116	0/0	c0007	1095	8	7	1	0	0	0	copy fasta	HAVCR1	chr5	157024413	157064116
HAVCR1_chr5_157024413_157064116	0/0	c0008	1080	7	7	0	0	0	0	copy fasta	HAVCR1	chr5	157024413	157064116
HAVCR1_chr5_157024413_157064116	0/0	c0009	1080	3	3	0	0	0	0	copy fasta	HAVCR1	chr5	157024413	157064116
HAVCR1_chr5_157024413_157064116	0/0	c0010	1098	3	3	0	0	0	0	copy fasta	HAVCR1	chr5	157024413	157064116
HAVCR1_chr5_157024413_157064116	0/0	c0011	1095	2	0	2	0	0	0	copy fasta	HAVCR1	chr5	157024413	157064116
HAVCR1_chr5_157024413_157064116	0/0	c0012	1098	1	1	0	0	0	0	copy fasta	HAVCR1	chr5	157024413	157064116
HAVCR1_chr5_157024413_157064116	0/0	c0013	1080	1	0	0	1	0	0	copy fasta	HAVCR1	chr5	157024413	157064116
HAVCR1_chr5_157024413_157064116	0/0	c0014	1080	1	0	0	1	0	0	copy fasta	HAVCR1	chr5	157024413	157064116
HAVCR1_chr5_157024413_157064116	0/0	c0015	1080	1	1	0	0	0	0	copy fasta	HAVCR1	chr5	157024413	157064116
HAVCR1_chr5_157024413_157064116	0/0	c0016	1080	1	0	0	1	0	0	copy fasta	HAVCR1	chr5	157024413	157064116
HAVCR1_chr5_157024413_157064116	0/0	c0017	1095	1	1	0	0	0	0	copy fasta	HAVCR1	chr5	157024413	157064116
HAVCR1_chr5_157024413_157064116	0/0	c0018	1095	1	0	0	0	1	0	copy fasta	HAVCR1	chr5	157024413	157064116
HAVCR2_chr5_157080832_157114044	0/1	c0001	906	326	77	53	154	8	33	copy fasta	HAVCR2	chr5	157080832	157114044
HAVCR2_chr5_157080832_157114044	1/0	c0002	906	44	20	11	6	4	2	copy fasta	HAVCR2	chr5	157080832	157114044
HAVCR2_chr5_157080832_157114044	0/0	c0003	906	5	0	1	4	0	0	copy fasta	HAVCR2	chr5	157080832	157114044
HAVCR2_chr5_157080832_157114044	0/0	c0004	906	1	0	0	0	0	1	copy fasta	HAVCR2	chr5	157080832	157114044
HAVCR2_chr5_157080832_157114044	0/0	c0005	906	1	1	0	0	0	0	copy fasta	HAVCR2	chr5	157080832	157114044
HAVCR2_chr5_157080832_157114044	0/0	c0006	906	1	0	1	0	0	0	copy fasta	HAVCR2	chr5	157080832	157114044
HAVCR2_chr5_157080832_157114044	0/0	c0007	906	1	0	0	1	0	0	copy fasta	HAVCR2	chr5	157080832	157114044
HAVCR2_chr5_157080832_157114044	0/0	c0008	906	1	0	0	1	0	0	copy fasta	HAVCR2	chr5	157080832	157114044
HAX1_chr1_154267629_154280875	1/0	c0001	840	366	92	67	162	9	35	copy fasta	HAX1	chr1	154267629	154280875
HAX1_chr1_154267629_154280875	0/1	c0002	840	20	1	5	4	1	8	copy fasta	HAX1	chr1	154267629	154280875
HAX1_chr1_154267629_154280875	0/0	c0003	840	3	0	0	3	0	0	copy fasta	HAX1	chr1	154267629	154280875
HAX1_chr1_154267629_154280875	0/0	c0004	840	1	0	0	1	0	0	copy fasta	HAX1	chr1	154267629	154280875
HAX1_chr1_154267629_154280875	0/0	c0005	840	1	1	0	0	0	0	copy fasta	HAX1	chr1	154267629	154280875
HAX1_chr1_154267629_154280875	0/0	c0006	840	1	0	0	0	0	1	copy fasta	HAX1	chr1	154267629	154280875
HBA1_chr16_171680_182522	0/0	c0000	0	1	0	0	1	0	0	copy fasta	HBA1	chr16	171680	182522
HBA1_chr16_171680_182522	1/1	c0001	429	396	93	66	185	14	36	copy fasta	HBA1	chr16	171680	182522
HBA1_chr16_171680_182522	0/0	c0002	429	1	1	0	0	0	0	copy fasta	HBA1	chr16	171680	182522
HBA2_chr16_167876_178710	0/0	c0000	0	15	10	2	1	0	2	copy fasta	HBA2	chr16	167876	178710
HBA2_chr16_167876_178710	1/1	c0001	429	369	78	64	177	12	36	copy fasta	HBA2	chr16	167876	178710
HBA2_chr16_167876_178710	0/0	c0002	429	2	0	0	2	0	0	copy fasta	HBA2	chr16	167876	178710
HBB_chr11_5220464_5232071	0/1	c0001	444	290	70	64	110	16	29	copy fasta	HBB	chr11	5220464	5232071
HBB_chr11_5220464_5232071	1/0	c0002	444	180	12	24	122	2	19	copy fasta	HBB	chr11	5220464	5232071
HBB_chr11_5220464_5232071	0/0	c0003	444	15	15	0	0	0	0	copy fasta	HBB	chr11	5220464	5232071
HBB_chr11_5220464_5232071	0/0	c0004	444	3	3	0	0	0	0	copy fasta	HBB	chr11	5220464	5232071
HBD_chr11_5227838_5239483	1/1	c0001	444	456	98	84	208	14	50	copy fasta	HBD	chr11	5227838	5239483
HBD_chr11_5227838_5239483	0/0	c0002	444	3	1	2	0	0	0	copy fasta	HBD	chr11	5227838	5239483
HBD_chr11_5227838_5239483	0/0	c0003	444	1	1	0	0	0	0	copy fasta	HBD	chr11	5227838	5239483
HBE1_chr11_5263345_5274945	1/1	c0001	444	413	96	80	177	12	46	copy fasta	HBE1	chr11	5263345	5274945
HBE1_chr11_5263345_5274945	0/0	c0002	444	1	0	0	1	0	0	copy fasta	HBE1	chr11	5263345	5274945
HBE1_chr11_5263345_5274945	0/0	c0003	444	1	1	0	0	0	0	copy fasta	HBE1	chr11	5263345	5274945
HBE1_chr11_5263345_5274945	0/0	c0004	444	1	1	0	0	0	0	copy fasta	HBE1	chr11	5263345	5274945
HBEGF_chr5_140327843_140351603	1/1	c0001	627	378	78	67	177	18	36	copy fasta	HBEGF	chr5	140327843	140351603
HBEGF_chr5_140327843_140351603	0/0	c0002	627	50	20	3	19	0	8	copy fasta	HBEGF	chr5	140327843	140351603
HBG1_chr11_5243269_5254857	0/0	c0001	444	370	88	62	168	14	38	copy fasta	HBG1	chr11	5243269	5254857
HBG1_chr11_5243269_5254857	1/0	c0002	444	57	5	12	31	0	8	copy fasta	HBG1	chr11	5243269	5254857