JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HBG1_chr11_5243269_5254857	0/0	c0003	129	3	0	2	1	0	0	copy fasta	HBG1	chr11	5243269	5254857
HBG1_chr11_5243269_5254857	0/0	c0004	444	2	1	0	1	0	0	copy fasta	HBG1	chr11	5243269	5254857
HBG1_chr11_5243269_5254857	0/0	c0005	218	1	0	0	1	0	0	copy fasta	HBG1	chr11	5243269	5254857
HBG2_chr11_5248188_5259781	1/1	c0001	444	425	94	72	201	13	43	copy fasta	HBG2	chr11	5248188	5259781
HBG2_chr11_5248188_5259781	0/0	c0002	315	3	0	2	1	0	0	copy fasta	HBG2	chr11	5248188	5259781
HBG2_chr11_5248188_5259781	0/0	c0003	444	1	0	0	0	0	1	copy fasta	HBG2	chr11	5248188	5259781
HBG2_chr11_5248188_5259781	0/0	c0004	444	1	0	0	0	1	0	copy fasta	HBG2	chr11	5248188	5259781
HBM_chr16_160978_171764	1/1	c0001	426	345	65	62	169	14	33	copy fasta	HBM	chr16	160978	171764
HBM_chr16_160978_171764	0/0	c0002	426	12	11	1	0	0	0	copy fasta	HBM	chr16	160978	171764
HBM_chr16_160978_171764	0/0	c0003	426	3	3	0	0	0	0	copy fasta	HBM	chr16	160978	171764
HBM_chr16_160978_171764	0/0	c0004	426	3	3	0	0	0	0	copy fasta	HBM	chr16	160978	171764
HBM_chr16_160978_171764	0/0	c0005	426	1	1	0	0	0	0	copy fasta	HBM	chr16	160978	171764
HBM_chr16_160978_171764	0/0	c0006	426	1	1	0	0	0	0	copy fasta	HBM	chr16	160978	171764
HBM_chr16_160978_171764	0/0	c0007	426	1	1	0	0	0	0	copy fasta	HBM	chr16	160978	171764
HBM_chr16_160978_171764	0/0	c0008	426	1	0	0	0	0	1	copy fasta	HBM	chr16	160978	171764
HBM_chr16_160978_171764	0/0	c0009	426	1	0	1	0	0	0	copy fasta	HBM	chr16	160978	171764
HBM_chr16_160978_171764	0/0	c0010	426	1	0	0	1	0	0	copy fasta	HBM	chr16	160978	171764
HBM_chr16_160978_171764	0/0	c0011	426	1	1	0	0	0	0	copy fasta	HBM	chr16	160978	171764
HBP1_chr7_107164003_107207522	1/1	c0001	1545	311	73	53	141	11	31	copy fasta	HBP1	chr7	107164003	107207522
HBP1_chr7_107164003_107207522	0/0	c0002	1545	49	9	13	15	3	9	copy fasta	HBP1	chr7	107164003	107207522
HBP1_chr7_107164003_107207522	0/0	c0003	1548	5	0	0	5	0	0	copy fasta	HBP1	chr7	107164003	107207522
HBP1_chr7_107164003_107207522	0/0	c0004	1545	1	1	0	0	0	0	copy fasta	HBP1	chr7	107164003	107207522
HBP1_chr7_107164003_107207522	0/0	c0005	1545	1	1	0	0	0	0	copy fasta	HBP1	chr7	107164003	107207522
HBP1_chr7_107164003_107207522	0/0	c0006	1545	1	0	0	1	0	0	copy fasta	HBP1	chr7	107164003	107207522
HBQ1_chr16_175459_186179	1/1	c0001	429	317	41	58	174	11	31	copy fasta	HBQ1	chr16	175459	186179
HBQ1_chr16_175459_186179	0/0	c0002	429	54	41	6	0	3	4	copy fasta	HBQ1	chr16	175459	186179
HBQ1_chr16_175459_186179	0/0	c0003	429	7	7	0	0	0	0	copy fasta	HBQ1	chr16	175459	186179
HBQ1_chr16_175459_186179	0/0	c0004	429	2	2	0	0	0	0	copy fasta	HBQ1	chr16	175459	186179
HBQ1_chr16_175459_186179	0/0	c0005	429	1	0	0	0	0	1	copy fasta	HBQ1	chr16	175459	186179
HBQ1_chr16_175459_186179	0/0	c0006	429	1	0	1	0	0	0	copy fasta	HBQ1	chr16	175459	186179
HBQ1_chr16_175459_186179	0/0	c0007	429	1	0	1	0	0	0	copy fasta	HBQ1	chr16	175459	186179
HBQ1_chr16_175459_186179	0/0	c0008	129	1	1	0	0	0	0	copy fasta	HBQ1	chr16	175459	186179
HBS1L_chr6_134955378_135059822	1/1	c0001	2055	238	60	41	99	9	27	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	c0002	2055	82	14	16	35	7	10	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	c0003	2055	10	8	2	0	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	c0004	2055	2	2	0	0	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	c0005	2055	2	0	0	2	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	c0006	2055	2	0	0	2	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	c0007	2055	2	2	0	0	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	c0008	2055	2	0	0	2	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	c0009	2055	1	0	1	0	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	c0010	2055	1	1	0	0	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	c0011	2055	1	1	0	0	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	c0012	2055	1	0	1	0	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	c0013	2055	1	1	0	0	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	c0014	2055	1	0	0	0	0	1	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	c0015	2055	1	1	0	0	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	c0016	2055	1	0	1	0	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBZ_chr16_147644_159503	0/0	c0001	429	420	84	79	196	16	45	copy fasta	HBZ	chr16	147644	159503
HBZ_chr16_147644_159503	0/0	c0002	429	6	6	0	0	0	0	copy fasta	HBZ	chr16	147644	159503