JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HBZ_chr16_147644_159503	0/0	c0003	429	2	2	0	0	0	0	copy fasta	HBZ	chr16	147644	159503
HBZ_chr16_147644_159503	0/0	c0004	429	2	0	2	0	0	0	copy fasta	HBZ	chr16	147644	159503
HBZ_chr16_147644_159503	0/0	c0005	95	1	0	1	0	0	0	copy fasta	HBZ	chr16	147644	159503
HBZ_chr16_147644_159503	0/0	c0006	300	1	0	0	0	0	1	copy fasta	HBZ	chr16	147644	159503
HCAR1_chr12_122721076_122735844	1/1	c0001	1041	405	90	73	182	18	40	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	c0002	1041	13	0	0	13	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	c0003	1041	4	0	0	4	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	c0004	1041	3	0	2	0	0	1	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	c0005	1041	2	2	0	0	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	c0006	1041	2	2	0	0	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	c0007	1041	2	0	0	2	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	c0008	1041	1	0	0	1	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	c0009	1025	1	0	0	1	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	c0010	1041	1	0	0	1	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	c0011	1041	1	0	0	0	0	1	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	c0012	1041	1	0	1	0	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR2_chr12_122696293_122708357	1/1	c0001	1092	368	80	61	182	10	33	copy fasta	HCAR2	chr12	122696293	122708357
HCAR2_chr12_122696293_122708357	0/0	c0002	1092	32	10	9	5	2	6	copy fasta	HCAR2	chr12	122696293	122708357
HCAR2_chr12_122696293_122708357	0/0	c0003	1092	16	1	9	0	5	1	copy fasta	HCAR2	chr12	122696293	122708357
HCAR2_chr12_122696293_122708357	0/0	c0004	1087	4	0	0	4	0	0	copy fasta	HCAR2	chr12	122696293	122708357
HCAR2_chr12_122696293_122708357	0/0	c0005	1092	2	2	0	0	0	0	copy fasta	HCAR2	chr12	122696293	122708357
HCAR2_chr12_122696293_122708357	0/0	c0006	1087	1	0	0	1	0	0	copy fasta	HCAR2	chr12	122696293	122708357
HCAR2_chr12_122696293_122708357	0/0	c0007	1092	1	0	0	1	0	0	copy fasta	HCAR2	chr12	122696293	122708357
HCAR2_chr12_122696293_122708357	0/0	c0008	1092	1	0	1	0	0	0	copy fasta	HCAR2	chr12	122696293	122708357
HCAR2_chr12_122696293_122708357	0/0	c0009	1092	1	0	0	1	0	0	copy fasta	HCAR2	chr12	122696293	122708357
HCAR2_chr12_122696293_122708357	0/0	c0010	1092	1	0	0	0	1	0	copy fasta	HCAR2	chr12	122696293	122708357
HCAR2_chr12_122696293_122708357	0/0	c0011	1092	1	1	0	0	0	0	copy fasta	HCAR2	chr12	122696293	122708357
HCAR3_chr12_122709756_122721811	0/1	c0001	1164	212	50	37	101	12	11	copy fasta	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	0/0	c0002	1164	113	19	26	54	4	10	copy fasta	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	1/0	c0003	1164	55	0	5	35	2	12	copy fasta	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	0/0	c0004	1164	17	14	1	0	0	2	copy fasta	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	0/0	c0005	1164	4	0	2	0	0	2	copy fasta	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	0/0	c0006	1164	3	0	0	0	0	3	copy fasta	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	0/0	c0007	1164	3	3	0	0	0	0	copy fasta	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	0/0	c0008	1164	3	0	0	0	0	3	copy fasta	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	0/0	c0009	1164	2	2	0	0	0	0	copy fasta	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	0/0	c0010	1164	1	0	0	1	0	0	copy fasta	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	0/0	c0011	1164	1	1	0	0	0	0	copy fasta	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	0/0	c0012	1164	1	0	0	1	0	0	copy fasta	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	0/0	c0013	1164	1	0	0	0	0	1	copy fasta	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	0/0	c0014	1127	1	1	0	0	0	0	copy fasta	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	0/0	c0015	1164	1	0	0	1	0	0	copy fasta	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	0/0	c0016	1164	1	0	0	1	0	0	copy fasta	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	0/0	c0017	1164	1	0	0	1	0	0	copy fasta	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	0/0	c0018	1164	1	1	0	0	0	0	copy fasta	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	0/0	c0019	1164	1	0	1	0	0	0	copy fasta	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	0/0	c0020	1164	1	0	0	1	0	0	copy fasta	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	0/0	c0021	1164	1	1	0	0	0	0	copy fasta	HCAR3	chr12	122709756	122721811
HCCS_chrX_11106332_11128086	1/1	c0001	807	236	66	32	105	9	22	copy fasta	HCCS	chrX	11106332	11128086
HCFC1R1_chr16_3017625_3028942	1/1	c0001	417	332	75	63	149	14	29	copy fasta	HCFC1R1	chr16	3017625	3028942