JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HCFC1R1_chr16_3017625_3028942	0/0	c0002	417	76	20	15	28	2	11	copy fasta	HCFC1R1	chr16	3017625	3028942
HCFC1R1_chr16_3017625_3028942	0/0	c0003	417	1	1	0	0	0	0	copy fasta	HCFC1R1	chr16	3017625	3028942
HCFC1R1_chr16_3017625_3028942	0/0	c0004	417	1	0	0	1	0	0	copy fasta	HCFC1R1	chr16	3017625	3028942
HCFC1R1_chr16_3017625_3028942	0/0	c0005	417	1	0	0	1	0	0	copy fasta	HCFC1R1	chr16	3017625	3028942
HCFC1R1_chr16_3017625_3028942	0/0	c0006	417	1	0	0	1	0	0	copy fasta	HCFC1R1	chr16	3017625	3028942
HCFC1_chrX_153942557_153976818	0/0	c0001	6108	105	7	19	68	0	11	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	1/0	c0002	6108	55	10	7	24	3	10	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	c0003	6108	30	27	3	0	0	0	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/1	c0004	6108	20	1	12	0	4	2	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	c0005	6108	12	10	2	0	0	0	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	c0006	6108	9	9	0	0	0	0	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	c0007	6109	5	1	0	4	0	0	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	c0008	6108	5	3	0	2	0	0	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	c0009	6108	3	0	0	3	0	0	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	c0010	6108	3	0	0	3	0	0	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	c0011	6109	2	0	0	2	0	0	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	c0012	6108	2	2	0	0	0	0	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	c0013	6109	1	0	0	1	0	0	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	c0014	6109	1	1	0	0	0	0	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	c0015	6108	1	0	0	1	0	0	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	c0016	6106	1	0	0	1	0	0	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	c0017	6109	1	1	0	0	0	0	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	c0018	6108	1	0	0	0	0	1	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	c0019	6108	1	0	0	0	0	1	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	c0020	6108	1	0	1	0	0	0	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	c0021	6108	1	0	0	1	0	0	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	c0022	6109	1	1	0	0	0	0	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	c0023	6108	1	1	0	0	0	0	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	c0024	6108	1	1	0	0	0	0	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	c0025	6109	1	0	0	1	0	0	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	c0026	6109	1	0	0	1	0	0	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	c0027	6108	1	0	0	1	0	0	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	c0028	6108	1	1	0	0	0	0	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	c0029	6108	1	0	0	0	0	1	copy fasta	HCFC1	chrX	153942557	153976818
HCFC2_chr12_104059531_104111524	1/1	c0001	2379	372	89	62	167	14	38	copy fasta	HCFC2	chr12	104059531	104111524
HCFC2_chr12_104059531_104111524	0/0	c0002	2379	2	2	0	0	0	0	copy fasta	HCFC2	chr12	104059531	104111524
HCFC2_chr12_104059531_104111524	0/0	c0003	2379	2	1	1	0	0	0	copy fasta	HCFC2	chr12	104059531	104111524
HCFC2_chr12_104059531_104111524	0/0	c0004	2379	2	2	0	0	0	0	copy fasta	HCFC2	chr12	104059531	104111524
HCFC2_chr12_104059531_104111524	0/0	c0005	2379	2	0	0	0	0	2	copy fasta	HCFC2	chr12	104059531	104111524
HCFC2_chr12_104059531_104111524	0/0	c0006	2379	1	0	0	1	0	0	copy fasta	HCFC2	chr12	104059531	104111524
HCFC2_chr12_104059531_104111524	0/0	c0007	2379	1	0	1	0	0	0	copy fasta	HCFC2	chr12	104059531	104111524
HCK_chr20_32047242_32106856	1/1	c0001	1581	258	70	63	80	13	30	copy fasta	HCK	chr20	32047242	32106856
HCK_chr20_32047242_32106856	0/0	c0002	1581	22	20	1	1	0	0	copy fasta	HCK	chr20	32047242	32106856
HCK_chr20_32047242_32106856	0/0	c0003	1581	2	1	1	0	0	0	copy fasta	HCK	chr20	32047242	32106856
HCK_chr20_32047242_32106856	0/0	c0004	1581	2	2	0	0	0	0	copy fasta	HCK	chr20	32047242	32106856
HCK_chr20_32047242_32106856	0/0	c0005	1581	1	0	0	1	0	0	copy fasta	HCK	chr20	32047242	32106856
HCK_chr20_32047242_32106856	0/0	c0006	1581	1	0	1	0	0	0	copy fasta	HCK	chr20	32047242	32106856
HCK_chr20_32047242_32106856	0/0	c0007	1581	1	0	0	0	0	1	copy fasta	HCK	chr20	32047242	32106856
HCK_chr20_32047242_32106856	0/0	c0008	1581	1	0	0	0	1	0	copy fasta	HCK	chr20	32047242	32106856
HCK_chr20_32047242_32106856	0/0	c0009	1581	1	0	0	0	0	1	copy fasta	HCK	chr20	32047242	32106856