JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HCK_chr20_32047242_32106856	0/0	c0010	1581	1	1	0	0	0	0	copy fasta	HCK	chr20	32047242	32106856
HCLS1_chr3_121626399_121665903	0/0	c0001	1461	102	36	19	27	4	16	copy fasta	HCLS1	chr3	121626399	121665903
HCLS1_chr3_121626399_121665903	0/0	c0002	1461	102	23	15	51	0	13	copy fasta	HCLS1	chr3	121626399	121665903
HCLS1_chr3_121626399_121665903	0/0	c0003	1473	97	4	15	66	5	7	copy fasta	HCLS1	chr3	121626399	121665903
HCLS1_chr3_121626399_121665903	0/0	c0004	1461	40	10	9	18	1	2	copy fasta	HCLS1	chr3	121626399	121665903
HCLS1_chr3_121626399_121665903	0/0	c0005	1461	10	3	5	0	1	1	copy fasta	HCLS1	chr3	121626399	121665903
HCLS1_chr3_121626399_121665903	0/1	c0006	1461	5	0	0	0	2	2	copy fasta	HCLS1	chr3	121626399	121665903
HCLS1_chr3_121626399_121665903	0/0	c0007	1461	5	4	1	0	0	0	copy fasta	HCLS1	chr3	121626399	121665903
HCLS1_chr3_121626399_121665903	0/0	c0008	1461	4	0	0	4	0	0	copy fasta	HCLS1	chr3	121626399	121665903
HCLS1_chr3_121626399_121665903	0/0	c0009	1461	4	3	1	0	0	0	copy fasta	HCLS1	chr3	121626399	121665903
HCLS1_chr3_121626399_121665903	0/0	c0010	1473	3	3	0	0	0	0	copy fasta	HCLS1	chr3	121626399	121665903
HCLS1_chr3_121626399_121665903	1/0	c0011	1461	3	1	1	0	0	0	copy fasta	HCLS1	chr3	121626399	121665903
HCLS1_chr3_121626399_121665903	0/0	c0012	1461	3	0	0	3	0	0	copy fasta	HCLS1	chr3	121626399	121665903
HCLS1_chr3_121626399_121665903	0/0	c0013	1473	2	2	0	0	0	0	copy fasta	HCLS1	chr3	121626399	121665903
HCLS1_chr3_121626399_121665903	0/0	c0014	1461	2	2	0	0	0	0	copy fasta	HCLS1	chr3	121626399	121665903
HCLS1_chr3_121626399_121665903	0/0	c0015	1473	1	0	0	0	0	1	copy fasta	HCLS1	chr3	121626399	121665903
HCLS1_chr3_121626399_121665903	0/0	c0016	1473	1	0	0	0	1	0	copy fasta	HCLS1	chr3	121626399	121665903
HCLS1_chr3_121626399_121665903	0/0	c0017	1473	1	1	0	0	0	0	copy fasta	HCLS1	chr3	121626399	121665903
HCLS1_chr3_121626399_121665903	0/0	c0018	1461	1	0	0	1	0	0	copy fasta	HCLS1	chr3	121626399	121665903
HCLS1_chr3_121626399_121665903	0/0	c0019	1473	1	0	0	1	0	0	copy fasta	HCLS1	chr3	121626399	121665903
HCLS1_chr3_121626399_121665903	0/0	c0020	1461	1	0	0	1	0	0	copy fasta	HCLS1	chr3	121626399	121665903
HCLS1_chr3_121626399_121665903	0/0	c0021	1461	1	0	0	1	0	0	copy fasta	HCLS1	chr3	121626399	121665903
HCLS1_chr3_121626399_121665903	0/0	c0022	1461	1	0	0	1	0	0	copy fasta	HCLS1	chr3	121626399	121665903
HCN1_chr5_45249948_45701380	1/1	c0001	2673	216	52	45	92	8	17	copy fasta	HCN1	chr5	45249948	45701380
HCN1_chr5_45249948_45701380	0/0	c0002	2664	5	4	1	0	0	0	copy fasta	HCN1	chr5	45249948	45701380
HCN1_chr5_45249948_45701380	0/0	c0003	2673	2	2	0	0	0	0	copy fasta	HCN1	chr5	45249948	45701380
HCN1_chr5_45249948_45701380	0/0	c0004	2673	1	0	1	0	0	0	copy fasta	HCN1	chr5	45249948	45701380
HCN1_chr5_45249948_45701380	0/0	c0005	2673	1	0	1	0	0	0	copy fasta	HCN1	chr5	45249948	45701380
HCN1_chr5_45249948_45701380	0/0	c0006	2673	1	0	0	0	0	1	copy fasta	HCN1	chr5	45249948	45701380
HCN2_chr19_584881_622159	0/0	c0001	2670	44	7	6	27	1	3	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0002	2670	29	0	2	25	0	2	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0003	2670	25	4	1	14	0	6	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0004	2670	24	2	3	14	1	4	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0005	2670	14	0	4	8	0	2	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0006	2670	12	4	2	4	0	2	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0007	2670	11	0	1	10	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0008	2670	11	7	0	1	0	3	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0009	2670	11	0	6	4	0	1	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0010	2670	9	1	1	7	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0011	2670	9	1	4	1	2	1	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0012	2670	9	3	0	5	1	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0013	2670	8	1	5	0	0	2	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0014	2670	7	1	0	6	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0015	2670	7	3	3	1	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0016	2670	6	1	1	4	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0017	2670	6	6	0	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0018	2670	6	4	2	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0019	2670	5	0	1	4	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0020	2670	5	4	0	1	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0021	2670	4	0	1	3	0	0	copy fasta	HCN2	chr19	584881	622159