JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HCN2_chr19_584881_622159	0/0	c0022	2670	4	0	1	3	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0023	2670	4	3	0	0	0	1	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0024	2670	4	1	2	0	0	1	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0025	2670	4	0	2	0	0	2	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0026	2670	4	2	0	2	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0027	2670	3	0	0	3	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0028	2670	3	0	2	0	1	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0029	2670	3	3	0	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0030	2670	3	1	2	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0031	2670	3	1	0	1	1	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0032	2670	3	3	0	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	1/0	c0033	2670	3	0	1	0	1	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0034	2670	3	2	0	0	0	1	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0035	2670	2	0	0	1	0	1	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0036	2670	2	0	2	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0037	2670	2	0	1	0	1	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0038	2670	2	1	1	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0039	2670	2	0	0	2	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0040	2670	2	0	0	2	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0041	2670	2	2	0	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0042	2670	2	2	0	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0043	2670	2	2	0	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0044	2670	2	0	1	0	0	1	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0045	2670	2	0	0	0	0	2	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0046	2670	2	1	1	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0047	2670	2	0	2	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0048	2670	2	0	2	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0049	2709	1	0	1	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0050	2670	1	1	0	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0051	2670	1	1	0	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0052	2670	1	0	0	1	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0053	2670	1	0	0	0	0	1	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0054	2670	1	0	0	0	0	1	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0055	2670	1	0	1	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0056	2670	1	0	0	1	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0057	2670	1	0	0	0	1	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0058	2670	1	0	1	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/1	c0059	2670	1	0	0	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0060	2670	1	0	1	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0061	2679	1	0	0	1	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0062	2670	1	1	0	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0063	2670	1	1	0	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0064	2670	1	0	0	0	0	1	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0065	2670	1	0	1	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0066	2670	1	0	1	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0067	2670	1	0	0	0	1	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0068	2670	1	1	0	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0069	2670	1	0	0	0	0	1	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0070	2670	1	0	0	0	0	1	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0071	2670	1	0	1	0	0	0	copy fasta	HCN2	chr19	584881	622159