JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HCN2_chr19_584881_622159	0/0	c0072	2670	1	0	1	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0073	2670	1	0	0	0	0	1	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0074	2670	1	0	1	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0075	2670	1	0	0	1	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0076	2670	1	1	0	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0077	2670	1	1	0	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0078	2670	1	1	0	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0079	2670	1	1	0	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0080	2670	1	1	0	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0081	2670	1	0	0	1	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0082	2670	1	1	0	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0083	2670	1	0	0	0	0	1	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0084	2670	1	1	0	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0085	2670	1	0	1	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0086	2670	1	0	0	0	1	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0087	2670	1	0	0	0	0	1	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0088	2670	1	0	0	0	0	1	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0089	2670	1	1	0	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0090	2670	1	0	0	1	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0091	2670	1	1	0	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0092	2691	1	0	1	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0093	2670	1	0	1	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0094	2670	1	1	0	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0095	2679	1	0	0	0	0	1	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0096	2670	1	1	0	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0097	2670	1	0	0	0	0	1	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0098	2670	1	1	0	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0099	2670	1	1	0	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0100	2670	1	0	0	1	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0101	2670	1	1	0	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0102	2670	1	0	1	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0103	2691	1	0	1	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0104	2670	1	0	1	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0105	2670	1	0	1	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0106	2679	1	0	0	1	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0107	2670	1	0	0	1	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0108	2670	1	1	0	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0109	2670	1	0	1	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0110	2670	1	1	0	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0111	2670	1	0	1	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0112	2670	1	0	0	0	0	1	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0113	2670	1	1	0	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0114	2670	1	1	0	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0115	2670	1	1	0	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0116	2670	1	0	1	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0117	2670	1	0	0	0	0	1	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0118	2670	1	1	0	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0119	2670	1	0	1	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0120	2670	1	0	1	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	c0121	2670	1	1	0	0	0	0	copy fasta	HCN2	chr19	584881	622159